MmuINT0041127 @ mm10
Intron Retention
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72358374-72360758:-
Coord C1 exon
chr5:72360651-72360758
Coord A exon
chr5:72358485-72360650
Coord C2 exon
chr5:72358374-72358484
Length
2166 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGATTTTTCCTTTTCTCCAGATT
3' ss Score
10.56
Exon sequences
Seq C1 exon
ACTGCAGCAAGGATCTGTTTCACTGTGGCACAGGCAAGTGCCTCCATTACAGCCTCTTGTGTGATGGGTACGATGACTGTGGGGACCTGAGTGACGAGCAAAACTGTG
Seq A exon
GTAAGTAGTTTTGATTCCTTAAAGCATTTCATGAAAACCCACCAAGATATTTATGACCAAGAACAAATATCTGTTTCCTAAATAGCTAGAAGGTTCAGTTGCAAAATTAAGCAAAACAAAACAAAATAAAACAACAACAACAAACCTCCTCCTGTTTTAGAAAGAAGAACGTGTCCAAACACTACTCTCAGTTGCACTTTATGGACCAGTATCTTATGTCTGGCCTAACAGTCACACTAAGGGCATATTAAGAAAGTGGAGTGGAGAGATAATATGGTTGTTAATGTGCCAGTGTTTTTTCTGTGTCATGATCTGTTTCTCTTCTGGCTAGAGCTGTCTCTTATTTGGATTTTGAGCTCCTGAACAAAACTGTGCTCAGAGATAAATTACAAAGTGGCGTGTGACCAAAGTCTCGCACTCCTCAGAGCAGCTGACTTCCAGGCACTGTAGTGACTCCATGCACAGTACGCTCACCAAGGATTAGGACTGCAGATTGGTTTCATGTACAGATGCTGATTTCTTGTCTTCCCTTTAAAGGAGCACATTCGATTCTGTATCATGTCTTTTGAATTTAAACTAGAAAAAAAAATAACTTACTGATTGATCTTTATAGCTTTGTGGTCAACTTTCTATTTTTATGCAATATACTATTGACAGTGGGACCTCTGCAGCATGGACCAAAGAGCAAGCTTGGCTGTAGACAAATGCTGCACAGTGCTCAGCATTAGACACTCTCTAAAGGGATGCTAGAAAGAATCGCAGTGTGAGGCAAAGGAAGTCTTGGAGTAGAGATGGTCAGAAAATAACCCCAAGCTGGGAAATTCAGTAGTTTCTACAAGTATTTTCTGCCTTTCCCTCACCAAATCCATAAAATATTGAAAACTCTAGGTGTACAAACCACTCACTAGTGATTCAATATGTGTGGGACTGCATTGGGGATAAAGGATGTGAGACAACTGGAATCTTGTTCATCACAGAATCTAGTGTGAAGAGCCCTTACAGTCCATCAATTCCACACTCCTCCATTTCCTGATGACGGAAGGAAAAAGGCAGGTCAGGAGAGTGCCACAATAGGACCAATTTAGAATCTGGCCATGTTAGTGGGTAGTGTCCATGTATAAAAAAAGAATTGTTAATACCAAAGGCCCCTGAAAATAAGCCAATATCACAAAGTCTATGCTTTCAAGATACCTTCATTAAATAGCACAATTATAGTGTTTGTTTGGACCATTGTTGCCCTGTTCCTTGTCTTGGTGGACCAAATCCGGGTAAGTCTTCCAGTTCCTGCCCAAGCTCCTCTCTTGTGGTTACTTCTTTTCTTCACACCATGCCTTCCATATTCTCTACTTTATTTCTCTAAAATATGCTTTACAGTCCATTGTTGTTCAGGAGATTATGACATTATTATTATGGATACACATGAAACTTTCTCATTTTTTCATCTGGTATTTGTGAATCCATACCTTTTATGGAACTGTTATATTTATGTTACAACACCCATCAAAATAAATCAGTGTATAAATTCTTCCCTTTAAGACAGGAAACTTGTCACTTAGTAAACTCAACCTCTCACTTGCCAAATTCCAGGAATGTGTGGATTGGGGCAGGAGTATATATCCAGATGCAAAGAAATCATAAAAACAATAATAATGGTTTCCCTTTCTTGCTTAGCAGTTCTTTCAAACATGAGCTATAGATTAAGATAATCCAGTAGAAAACCTGGGCTTAGCATCAGGAGGGATGACATAAGACGACTCTCATCTTTCCAGCCTGCCAGAGTGATGTTGTAATTCTTAGGGACACAGCAAACTTGTTACAAACACATCAATCAGCTATCTGCATCTTGAAGCTCAAAGCTTTATTCTGTTCATTTGACTCAGTGTAAAAGTCATAGATTTAATTTTTTCCCCTAAATAAAGAAAACAAGACAGCCAATAATTAGAACACCTGTCCTGGGAAACAGATGAGTCTTTGCCTTCAGGGATGTGGAGAGTGGAGCCTGACACTGGTAGAAAGTAGCATTTGATCTTAGGCATATCTATCCCAGGAACCTTAGTGATGGAACTGGAAAGAGAGTGAGTGTCTTCAGTTGGAACTGAGAGCTGCACAAGTGTAAGGGCTTCCCATACATTTTCCCTCATCATCATGATTTTTCCTTTTCTCCAG
Seq C2 exon
ATTGTAATCTCACAAAAGAGCATCGCTGTGGAGATGGGCGCTGCATTGCGGCTGAGTGGGTGTGCGATGGGGACCATGACTGTGTGGACAAGTCTGATGAGGTCAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220:ENSMUST00000167460:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types