RnoINT0040948 @ rn6
Intron Retention
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38413673-38415955:+
Coord C1 exon
chr14:38413673-38413780
Coord A exon
chr14:38413781-38415844
Coord C2 exon
chr14:38415845-38415955
Length
2064 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGATATATCCTTTTCTCCAGATT
3' ss Score
8.72
Exon sequences
Seq C1 exon
ACTGCAGCGAGGATCTGTTTCACTGTGGAACAGGCAAGTGCCTCCACCACAGCCTTGTGTGCGATGGGTATGATGACTGTGGGGACCTGAGCGACGAGCAAAACTGTG
Seq A exon
GTAAGTGATTTTGAGTTCTTAAGGGTTTCACTAAAAACCACATATGGCCAAGAACGAATATCTGTCTGATTCCTGAATGACTAGGAGGTTCAGTTGTAAAATTAAGCAAAACAAAACAAAATAAAACAAAACAAAATAACAACAGCAGCAGCAACAACAAACCTCCTTCTTATTTAGAAAGGAAAGTGTCCAAACACTGCTCTCAGTTGTGCCTTATGGACCAGCATCCTCCTCGCTTAACAGTCACACAAGGGCAGATTAAGGAAGTATAGTAGAAAGATAATATGGTTGTTACAGTGCTGGTGTTTTTTTTGTGTCACGTTCTGTTTCTCTTCTGGCTAGAGCTGTCTCATATTTAGATTTTGAGCTCCTGAGCAAAACTGTTCAGAGAAATTATAAAGCCCAGCACGTGACCGAAGACTCCCGCCCCCGAGAGCAGCTGACTTCCAGGCACTGTAGCAACTTCTTGTACAGTATGGTCACCAAGGATTAGGATGACAGATTGGCTTTATGTCCAAATGCTAGTTTCTTGCCTTCCCAAGCACAAACCTTCCTCTGAAGGAACATACTCAATTCTGCATCATGTCTTTTGAATCTAAAGCAGAAAAAATAACTCGTGCTGATTGATCTTTATAGCTTCGAGATAAGCTTTGTATTTTATGCATTGTATTGTTGACAGCAGGAACTTCGCAGTGTGTACCAGAGAGCAAGCTTGAATGAAGACAGACGCTGAACAGGGACCAGCATTGGTGACTCTCAAGAGGGATGCTAGAAAGAATAGGAATGTGAGGCAAAGGAAGTCTTGGAGTGGAGATGGTCAGAAAAGAGCCCCAAGCTAGGAAATAAAATTGGTAGTTTCTACACGTATTGTCTAACTTCCCCTCACCAAATCCATAAAATATTGAAAATTCTAGGCGTACAAACCACCCTCTAGTGATTTGTAGATACGGGACTGTCTATATTTGGGGCAAAGGATGTGAGACTACTGGAATCTTGTTTATCACAGAATCTAGTGTGAGGAATGCTTACAGGCCATCTAATCCACACCCTTCATTGTCCTGAGGACAAGCAGATGTCAGAAAGTCTATGCTTTCAAGATGCCTTCATTAAAGAGCAGAAATTATAGTTTTCTTTGAACCAGTCATTGCCCTGTTCTGCTTTTGGTGGACCAAACATGGCTAGGTCTTCTGGTTCTGCCTGAGCTCCTCTCTTGTGGCTACTTCTTTTCCTTCTATGGAAGCATCATGGCTTCCATAATTTCTACTTTATTTACCTAAAATATGCTTTATGGTCCATTGTTGCTCAGGAGATTGTGACCAAGGCCGTGTCCATGGATACACATGAAACTTTCTCATTTTTCCATCTGCTATTTGTAGATCCACACCTTTATGGAGCCGTTCTATTTATGTCACAACATCGATCAGAATAAAGCAGTGTATAAATTCTTCCCTTTAAGACAAGAAACTTGTCACTTAGTGAACCCCTCACTTGCCAAATTCCAGGAATGGGTGGGTTGGGACAGAGTATGTATCCAGATGCAAAGAAATCATAAAAACAATAATGGTTTGCCTTTCTTGCTTAGCAATTCTTTCAAACATGAGCTATAGATTAAGATAATCCAGTAGAAAACCTGGGCTTAGCATCAGGAGGGATGACACAAGAGGACTCTCATCTTTCCAGAGAGATGCTATAATTCTTAGGAACACAGCAGACTTGGGTCAGACGCATCATTCAGCCATCTGCATCTTGAAGCTCAAAGATTCACTCTGTTCACTTGACTCAGTGTAAAAGTCATAGATTTATTTTTTTCCTTAAATAAAGGAAACAAGACATTCAATATTAGAGCACCTGTCCTGGGGAACAGGTGACTCTTTGCCCTCAGGATGTAGCATGGAGCCTGACCCTGATAGAAGGTAGCATTTGAACTTAGATCTATCTGTCCTAGGAACATTAGCGATGGAGCTGGAACGAGAGTGAGTGTCTTCAGCTAGAACTGTGAGCAGCACAAGTCTAGGGGTTTCCTGTACATTTTTCCCCATCTTCATGATATATCCTTTTCTCCAG
Seq C2 exon
ATTGCAATCTCACAAAAGAGCATCGCTGTGGAGACGGGCGCTGCATCGCGGCTGAGTGGGTGTGTGATGGGGACCATGACTGTGTGGACAAGTCTGACGAGGTCAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302:ENSRNOT00000064128:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]