DreINT0007438 @ danRer10
Intron Retention
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44159964-44162627:+
Coord C1 exon
chr23:44159964-44160071
Coord A exon
chr23:44160072-44162516
Coord C2 exon
chr23:44162517-44162627
Length
2445 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TATGTTTTGCTGTGCTGCAGTGT
3' ss Score
7.51
Exon sequences
Seq C1 exon
CTTGTGCAGACACTCAGCATTTGTGTGGCACCGGCCGCTGCATTAATTCCGATCTTCTCTGCGACGGCTACGATGACTGTGGTGATCTGAGCGATGAGCAAAACTGTG
Seq A exon
GTGAGTTTCACAACTGAATTGAGATTGGTTTATGAAGTAAGATGTTATGCAAAGTATTGTTTACATACAAAATATGGAAATGGACAGGATTTATAATGGTATTAGTGGCATTAAATACACTATCCTAATTGCAGAACCATACAAAATGCTTTTTTCATTGTAAATTAAATGTATTTATTTATTACAAGTCAAATGGCATAAAAACACACTTCAGATTGCATTTAGATACAGTCACACCTTTGTTTGTTGTGAATACACGCCCTCTAGTGGCCACAAATGGCATACTGTGCCTTTAATTTAATTCATCTTTGTTTCTGTAGCATTTTTTACGATGTAGATTGTCAAAGCAGCTAAACGTAGTTAAAGAAATAAGTAAAAGCCATAACATTTCAAATTGATAAACTGAAACTGCATCTGTTCAGTTTTGTATACTAATGCTATGTGTAAACGGCGATGTGTCTTCTTTGATTGAACTTAACAAAAGCATATAAAAAATTAATTTTATTACAAATCAAATGGCATAAAAACACACTCCAAATTCCCTTTAAATGCATTCATTTTGACAATTTGCTCTCATTTCTAAACACACCTTTGTTTGTTGTGAATACACGCACTCTAGTGGCCACAAACTGCATATCCTGCCTTTAATTAAGTTCATATTTTTTTCTGTTGCACTTTTTACGATGTAGATTGTGTCAAAGCAGCTTAACTTAAATAAAGAAAAGAGTAAAAGCCATAACATTTCAAATCCATAAACTGAAACTGCTTCAGTTCAGTTTTGCATAATAATGCTATGTGTAAACTGCGATGTGTTTCCTTTGATTGGACTAAATAAAATACATATAAAGAATTTATTATGATTCAAGTGGCATAAACACACACTCCAAATTCCCTTTAAATTCATTCATTTTGACAATTTATTCTCATTTCTAAACACACCTGTGTTTGTTGTGAATACGCGCCCTCTAGTGGCCACAAGTTACATACTGTACCTTCAATTCAATTAATTTTTATTTCTATAGAGCTTTTTACAATGCAGACTGTGTCAAAGCAGCTAAATGCAAGAGAATAAAAGTTATAACATTTCAGAATGTTAGACTGAAACTGCTTCAGTTCATTTCAGTATAATAATCCCACATGTAAACGGCGATGTGTTTCCTTTGATTGAAGTCAATTGGCATAAAAACACACTCCAAATTGTGTTTAGATACAGTCACACCTTTGTTTGTTGTGAATACACGCCCTCTAGTGGCCACAAACTGCATACTGTGCCTTTAACTCAGTTCATCTTTATTTCTGTTGCGCTTTTTACGATGTAAATTGTGTCAAAGCAGCTAAACGTAAATGAAGAAATGAGTAAAAGCCATAACATTTCAAATCCATAAACTGAAACTGCTTCAGTTCAGTTTTGTATACGAATGCAAGTCAAGTGGCATAAAAACACACTCCAAATTCCCTTTAAATGCATTCATTTCAATTTGCTCTCATTTCTAGACACACCTGTGTTTGTTGTTAATACACGCCCTCTAGTGGCCACAAGTTACATACTGTACCATTAATTCAATATATTTTTATTTCTATAGCGCTTTTTACAATGTAGATTGTGTCAAAGCAGTTAAATGTAGATGAAGAAAAGACAATGAAAGCCATAACATTTTAAATTGTTGAACTGAAACTGCTTCAGTTCATTTCAGTATAATGTAATTTGTAAACGGTGATGTGTCTTCTTTGATTGGATTAAAAATAATAGATGTAAATAATTCATTTTATTACAAGTCAGTTGGCATAAAAACACCCACCAAATTGCATTTAAATATTGTCATTTTGACAATTCGAGCTCATTTCTAAACACACTTTTGTTTGTTGTGAATGCACGCCCTCTAGTGGCCAAAAGTTGCATACTTTGCCTTTACTTGAACCCAGTTCATCTTTATTTTTATAGCGCTTTTTACAATGTAGATTGTGTCAAAGCAGCTAAACGTAGATGAAGAAAACAAAGTAAAACCCATAACACTTCACATTGATAAATTAAAACCGCTTTAGTTCAGTTTAGTATATTAATGCCATGTGTAAATGGCGATATGTCTCATTGATTGGATAAACCCAAATGCATGTTCTCAAGCAGTTAAAGAATTAATTTTATTTACATATCAAATGACATAAAAACACACTCTAAATTCCCTTTAAATACAGTCATTTTGACAATTTGCGCTCATTTCTAAACACATTGATTAGTAGATTTGTTAGTTCTAGTCACATGACATGGTGTTGAAATGTTTTCAACTGGAAGTGCCTGGAAAACTCAAGAAAATTGCACTGATTACGCATCACTAGCTATTTGCACACACAAGCCATGCGACACTATTGGAAATAACAAACTTGCGCATACAAAATTTGCGATATGTCAATGACCCCTAAATGAATGTATGTTTTGCTGTGCTGCAG
Seq C2 exon
TGTGTGATGAGCTTGAAGAGCACCACTGTGGGGATGGACGCTGTATTCCTCGAGAGTGGCTCTGTGACGGAGATCATGACTGTCTGGACAAGAGCGACGAGCTCAACTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281:ENSDART00000167813:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]