BtaINT0043110 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009331 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr7:6089436-6090631:+
Coord C1 exon
chr7:6089436-6089546
Coord A exon
chr7:6089547-6090421
Coord C2 exon
chr7:6090422-6090631
Length
875 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
AGCTTCGCCTCGCCCGCCAGGCT
3' ss Score
6.13
Exon sequences
Seq C1 exon
CCTTCGAGGCCACGCGCTTCTACAATGTCAGCGCGCGCAGCCCGCTCGCCCGGGAGCTGTGTGCGGGGCCTGCGTGCAACGAAGTGGAGCGCGCCCTGGCCCAGGGCCCCG
Seq A exon
GTGAGTGCGCGAGGCCACTGCCCCTTCCGAGCACCCGCCACCCCAACACGACCCGTGGGCCTGTGGGAGGGCTGCCCATTTGGAGGGAGTCGTCAGGCGGGGGAGCGTACAGCGTGGTAAAAGGAGGAAGGCCCGGCTCGGTCAAGGGCGCGCGTCCTGAGACGAGGGGGTTGAAGTGCGCAGGCAGGGTGGAAGGAGGAGGGATTCGAAGGGTGGGAGTGAGCAGAGGAAGGGGGCGGGGTCCTAGCTGGATGAGGGCGGGGCCCATCGAGGTGGGGTGGGCAGTGAAGAGGTGGGGCCTGGAAGGGCGGGTGTGGGCCGTGATGAGGGGGCGGGACCTAGCCTGGTGGGGATGGCAGTGAGGAGGGGGGGGCCTAGAGGGGTGGGTGTGGGCAGGGGTGAGGGGGCGGAGCCAAGAGAGAGTGGGCAATGATGAGGGCGGGGTCTAGCGGGGTGGGCAGGGTCTAGCAGGGTGGGCGGGGCGGGCATAGAAGCCGGAGGCCCGGAAGGGAGCCCTTGCCTCCCCTCCCCCACAAGGCAGATCCAGGGACCCAAGCCGTGAGCTCAGACTGGCGGCAGCGAAGGGCGGAGTGGAATTACTGGGAACCCTTTTCTTTATTTTCCAAACTTCTTGAATTTAGATTGCATTTAGTTCAAAAGTTTTATTTTTTTAATTTTGTTTTCATAAATACTAGGCAAATACTCACGTGAAATTCCACCAGGTCAGGGCTCAGGGCTTCCCGGGCACTGTCTCCACTCTGTGGATCGTGGTCCTGGCCCCTAGGGACTTCTCCATCCCAGGCCCAGGCAGAGGCGAGGGCCAAGTGGGGAGCTTGGAGTTCCCAGGGCCCTGACAGCTTCGCCTCGCCCGCCAG
Seq C2 exon
GCTGGTCCCCTGAAGAGCGAGGTCCCGTGGCCGTTCCGGAGGAGGGGGTGACAGTCACGCGCTGTGGCTGCGCCCGCGCCTGCAGCATCAGCGGGGAGCCGGTGTGTGGCTCCGACGGCGTTGTCTACGCCAGCGCCTGCCATCTGCAGGAGGCCGCCTGCCGCCGCCGCGTGAGATTGGAGCCCGCGCCCCCTGGCCGCTGCGCGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009331:ENSBTAT00000047290:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.141
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=18.4)
A:
NA
C2:
PF0764810=Kazal_2=WD(100=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCACGCGCTTCTAC
R:
CGCGGGCTCCAATCTCAC
Band lengths:
294-1169
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]