HsaINT0040550 @ hg38
Intron Retention
Gene
ENSG00000160111 | CPAMD8
Description
C3 and PZP like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr19:16896456-16897801:-
Coord C1 exon
chr19:16897691-16897801
Coord A exon
chr19:16896666-16897690
Coord C2 exon
chr19:16896456-16896665
Length
1025 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GAGCCTGCCTCGTCCCCCAGGCT
3' ss Score
7.3
Exon sequences
Seq C1 exon
CCTTCGAGGCCACTCGCTTCTACAACGTCAGCACCCACAGCCCACTCGCCCGGGAACTGTGCGCCGGACCCGCGTGCAACGAAGTGGAGCGCGCCCCTGCCCGGGGCCCGG
Seq A exon
GTGAGTGCGCGGAGCCACTGCCGCCCCCCACCGCGGCCTGCCACACCCCGACTCCCACCCTCGGACGCCAGGGAGGGCTCCCCTGGGGGCTTGGCAGAGGAGGGGCCAACGTAAAGTCAGGAGAACGCAGCATAGAGGTGGGCGGGCGCTCTGCCTGTACGGGGGAGGCGGGGCTGGAGGAGCGGTCAGCGGGGAGGGGCGTGGCTGGGGGAGTGGTAAGTGCGGAAGGGAAGTGGCTGGGGAATGGTCAGTATACTGGGGGCAGGGCCGAGCCAGTGAGGGTGTGGTCACTGTGGTGGGGACTGGGCGCAATGGGTTGAGGGTGGTCAGTGTGGTGAGGGCGGGGTCGAGCGGCGAGGGGGAGGTGAGTGCGGAGGGTGCGGGGTTGAGGGCGGGTGTGTTCAGTGCGGGGGGCGGGGCCGAACGGGGTGGGTGTGGTCAGTGCGAAGGGGACGGGGTTGAGAGTGGATGTGGTTAGTGCTGAGGGGATGAGGTTGCGGTGGGTGTGGTCAGTGCGGGGGGCGGGGTCGAGGGTGGGTGCGGTCAGCGCTGAGGGGCGGGATTTGTGGTGGGTGTGGTCAGTGCGGAGGGGGCGGGGTTAAGAGTGGTCAGGACGGAGGGGGCGGGGTTGAGGGTAGGTGTGGTCACCGCGGAGGGGGCGGGGTTGAGGATAGGAGCGGTCAGTGCGGTGGGGGTGGGGTTGGGGTGGGTGTGGTCAGTGCGGAGGAGGCGCGGCAGGGGACGGGGCTGTTGTTGCAGGGCGGCCCAGACAGGACGCCCTGTCTCCTTTCTCTCCTACAACCGCTTTTTAAAAGTCTGTTTCTGTTTTTGTAAGTATTAGGCAAATACCTGCGTGAAATTCCATAAGGCCAGGGCTCAGGACCTCCCATTAACTGTCGCGCCCCAAGACCCACCGAGGGGGTAGTGGGCCCGGGACCCAGGGACATCTTCCCCACCCCCAGGTTCTGTGGGGGCGCGGGCAAGGTTCAGGGTGGGGGGTCTGTCGAGCCTGCCTCGTCCCCCAG
Seq C2 exon
GCTGGTTCCCCGGCGAGTCGGGCCCTGCCGTGGCCCCTGAGGAGGGGGCGGCGATCGCGCGATGCGGCTGCGACCACGACTGCGGCGCCCAGGGGAACCCGGTGTGCGGCTCCGACGGGGTGGTCTACGCCAGCGCCTGCCGCCTGCGGGAGGCCGCCTGCCGCCAGGCCGCGCCCCTGGAGCCCGCGCCTCCCAGCTGCTGCGCCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160111:ENST00000443236:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(10.3=18.4)
A:
NA
C2:
PF0764810=Kazal_2=WD(100=57.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCCACTCGCTTCTACAAC
R:
CTGGCGTAGACCACCCCG
Band lengths:
239-1264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development