DreINT0007491 @ danRer10
Intron Retention
Gene
ENSDARG00000056530 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr22:21267294-21267708:+
Coord C1 exon
chr22:21267294-21267404
Coord A exon
chr22:21267405-21267495
Coord C2 exon
chr22:21267496-21267708
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TATTGCTCTGTCACTCCCAGGCT
3' ss Score
7.98
Exon sequences
Seq C1 exon
CATTTGAAGCCACTCGTTTCTATAATGTGAGTGAGAGCAGTCCTCTAGCACGAGAACTTTGCGATGGCACCACATGTAATGAAGTGGAAAGTTCCCGCAATCATTGGACAG
Seq A exon
GTCAGTATATCTTTGTTTTCATTATATCTGCTTAATATTAATAGTGTATCTGCTTTATTATCACATACTTTTATTGCTCTGTCACTCCCAG
Seq C2 exon
GCTTTGTGCAAGGCAGCCAGTGCAACAACATTTTTGACTGTCCAGAAGAGGAACACTATGAGCGATGTACCTGTTATCGTGACTGCGGCTATGATGGCGAGCCAGTGTGTGGTTCAGATGGCCAAATCTACCAGAACCAGTGTCAGATGGAAGTGTCTGCTTGCAGAAACAGCACACGGATTGAACAGATGCCTTTCAGCCACTGCCCACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056530:ENSDART00000134893:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=18.4)
A:
NA
C2:
PF0764810=Kazal_2=WD(100=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGATGGCACCACATGTAAT
R:
TTGGCCATCTGAACCACACAC
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]