GgaINT1010330 @ galGal4
Intron Retention
Gene
ENSGALG00000003742 | CPAMD8
Description
C3 and PZP-like, alpha-2-macroglobulin domain containing 8 [Source:HGNC Symbol;Acc:HGNC:23228]
Coordinates
chr28:4009982-4010887:+
Coord C1 exon
chr28:4009982-4010092
Coord A exon
chr28:4010093-4010674
Coord C2 exon
chr28:4010675-4010887
Length
582 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTTTCTGTTTACTTTGCAGGCT
3' ss Score
10.44
Exon sequences
Seq C1 exon
CCTTTGAAGCAACTCGTTTCTACAACGTGAGTGAGAACAGCCCCTTGGCGCGGGAGCTCTGCGATGGGCCGACGTGCAATGAGGTGGAGAGCTCAGCAAGCCAGTGGGCTG
Seq A exon
GTGAGTTGCACAAAAGCCAAGCAGAGTTTAGAAAATGGAGCCTGCAGGCACATAGGTCCAGGAGTTCAGAACTCAAAGTGATATTGAGAAAGACGTTCTATTTCAGTTTGTGTTGGTGGAAGGTTTACAAACGTCTGCATGAGAGCGGCATTAAACTCATGACAGCCAAAGACAGCAACTTATTCTGCTCTCCTGTCTCCAAAAGTGACTCTTTTATTTGCTGCAGAGGCAAAATGTAGTGCATAACTCTGGACATACCTGTGGAAAGTGAGATGTTTTAACACACATAAAACTTCTTTCAAATGCAGTTTAGTTTCCTTTCTATAAAATATCTTGCAGTGGAGTTCCTCAATTGACTGAAAGATCAGATTACATTCAATAGTGACAGGATTAACTTGTCCCGGAAACAGTAATCTCTTTCCTATCCTACTTGGTATGGAGATCTGGGGGGGTTGTACTGTCCAATACCTGAAATTCAATGTGAAAATTTACATAGGAGAAGTAAGGAGAAAACTTTCCTCGTCTTTCCCTTCCCTACACTGTGCCACAATGTTGCTTTGGATGTTTCTGTTTACTTTGCAG
Seq C2 exon
GCTTTTCTCACTCCGGGCCGTGCAATAACATTTTTGGATGCTTGGAGGATGAGTATTTTGAGCAGTGCATGTGCTCAAGAGACTGTGGCTATGATGGGGATCCCGTGTGTGGATCAGATGGACAGATCTACCAGAACCATTGCCAAATGGAAGTAGCATCGTGCAGGAACAATACGAGGATAGAGCAGATCCCCATGTCTCAGTGTTCTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003742:ENSGALT00000005938:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.097
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(7.7=18.4)
A:
NA
C2:
PF0764810=Kazal_2=WD(100=56.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTGAAGCAACTCGTTTCT
R:
AGAACACTGAGACATGGGGATCT
Band lengths:
320-902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]