BtaINT0043211 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023941 | CPN1
Description
carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2312]
Coordinates
chr26:20851408-20858020:-
Coord C1 exon
chr26:20857821-20858020
Coord A exon
chr26:20851564-20857820
Coord C2 exon
chr26:20851408-20851563
Length
6257 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TTTCTTCCTTTTCCTACTAGGAA
3' ss Score
11.22
Exon sequences
Seq C1 exon
TGGAACCGGAAGTCAAGTACGTGGGGAATATGCACGGCAATGAGGTGCTAGGCCGTGAGCTGCTGCTGCAGCTGTCGGAGTTCCTGTGTGAGGAATTCCGCAACAGGAACCAGCGCATCGTCCGGCTGGTGGAGGACACGCGCATCCACATCATGCCGTCCATGAACCCTGACGGCTACGAGGTGGCCGCTGCTGCCCAG
Seq A exon
GTACCGACCTCCAGGGGCAGGCCCTGCAGAGAGCAGAGCCATCTTAATTAAGGGTGTAAGGAAAAGCTGGGGAGCAGGTATCATCTTTGTCCCACTGTGAATGCCATGGTATGACAGAGAAAAAGCTGGAGAAACAGAATGAAGTTTGAAGACAGGTTCAGCCCTGTAGCACCCTAGGCAATGAATGTGGCTTTTCTCTGAGCCTGGATTCCCTCTCTGCCTTTCCAGCTGAGCTCTCTGTTTCATTGCGAGGATCAGTGAAGCAATATCAATGACAACACTTTGTCAACTGGAAAATACTAAAGAGGTACAAAAGGCTATTGCAAAACAGCCCTCCTTCCCGGCACTTTAGGCTTCAAATCCTAAGTATTCTTCTCCCTCCCACACTACATTTCAATTTGTATTTGGGGGGAGAGAAGAAAAAGTTCTCCGAAATTGTGGGTGTGACAGGTTAGTTCTTCACATTTTAATAAATAATAAGTTTAATAAATAATAATAAATAATAAATATATAATTTATATAATAAATAATAAATTCTTTGCATTTATTTACATTTCTATATGGCTTTTTTGTCTATTAGTATAGTACTGAGCCTTTGAATTCTTTATTTTAGGGTCACATTGGTCAGGGGACAGATCAAAACAAATGTTTATGGGGTTTACTTTATTTCCTAACATAAATTCAAAATATCATTGTGCCTAACTTTAAATCAGTGGTTCTTTTGTAGCTGTGCATCAGAATTGAGGATAAAGATATTCAAAATATGATTCCCAGGTCCTGCCCCCACCCCCAAATCTACTGAATTAGAATATGTTCCTTTAAAAGCTATATTTAAACCTGGTTTGTTTGGGGTTTTTTTTTTTTTGGAGGGGTGGTATAAATTAAAGAGGTCTTTTTTTCTTTTAAACATATGTTTTTTGGAGGTAGTCTTGAAATGTTTTTAAGACTAGACTTCACTACTTTACTTTTTTTTTACAAATTTTGTTTTATTCTGACAAGAACTATTCAAGGTGAAATCTACCCCCTTAACAAAGTCTTAAGTGTATAATACAGTATTGCTGATTATAGGTAAAATGTTGTATCCCTGATCTCCAGAACTTATCTATCCTGTTCAATGAAAAAATTATGACCCTTCATTAGTAATTTCCCATTTCCCCCTCCTCCCAGCCCCTGACAACCACCTTCTACTCTCTGACTGCATGAATCGGACTGCTGTGTCCTGTACAAGTGGAACCACTCAGCATCTCTTCTTTAATGACCCATCTTGGTTTAAACCTACTTGAGGACAGGGGCTGAGGGGTGAATAGCAGCAGGGAGGGGAACGCAGCCAAATGTTGAACCAAGCCTAAATTTCACCCTTGTAATCTTACAACCTCCTGCTGACATGACTCAGCAAATGAAAAAAGCAGAATAACAACAATAAGGTATAACAACAACAACAAAAAATGTCACCTCCCCTCTGGACATCAGAGAGGTGGACGCTAATGTGCCTGAAGACTTAAGTTTCCAAAAAAGCAGGACAATTTGAAAGTGGTGTGGGGGAGAACCCAGCCTGGCTGCTTTCCTCCCAGTAGCCCTTTCTTGTACAACAGTAGGAAGACAAGGAGAAGCACATCAGACCTGCCCACATCTTTTGTGTGATGGGCTGGGGCTGGGTTGGTAAAGCTCCTGTCAGCCCACTAGATCCTAGAGCTATCTATCTCTGAGGAGCTAGTCACCTCTGCTCACTTACTGTGTACTTGTTCAAAGGGAGCAGATCTTGAACCTGAACCCAAAAGAGAACCCATCATGTTCTCCAACTCCCAGAGCTACCTGCCAACCTATCTGCGTTGCTACACAGGGAAGACCTGCCCGGCCACCTAAATTTAAAGCCACCTGTAGGGAATGTAGAATAATGTGGCTTTGCCTGTCAAAGATGTTCCAGTCCTAATCCTTGGAACCTGTGAATGTGTTGTATTACATGGCAAAGGGAATAAAAGTTGTTAATCATCTCACCTTAAAGTATCCTGGATTATTTGGATGGGCCCAGAGTAACCAACGGAGAAGGCAATGGCAACCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATAGAGGAGCCTGGTGGGCTGAGGTCCATGGGGTTGCTACGAGTTGGGCACGACTGAGCAACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAATCCACTCTGGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTTCCGTCTATGGGGTCACACAGAGTCGGACACGACTGAAGCATCTTAGCAGCAGCAGCAGCAGCAGTGTAACCAATTGTGCAGGTTCTTTAAATGTGGAAGAGAGAGGCAGGAGATCACAGTCAAATAGAGATTTGAATATGTTCTAAGGGATTAGAGACTTCAGAAAGAACACAACCCTGCTAATATCTTGATTTTGGTCTTGTGAGACCCGTTTCAGTCTGCTAACCTCCAAAACTATAAGATCATAAGTTTGTGCAAATTTAAGCCCTAGGGTTGTGGTAGTTTTTTATAGTAGTAGTAGGAAGCTAATAAGCAAACCCTGTGAGTGGGAACTTTCTGTTAAGGGAAGTCTTGACTGTCAGCCTAACTAATGACACGTGTGAGTAGTAAGTCAACTGATAGGTAAGTTAGAATAACTATTAACATGAACAGTTATGAGTTATGTTGATATGAATGAGAAAGCAATGGAAATATCTGGAAGCATAATAAAAACCAGTATTTCATAGATCTCATCGAAGTGAAAAATCAAACTCCACATAGAAAAATCATATAAATATTTTCCACTGGAACAGAATTGCTGTAGAAAACTTAAGAGAATGTCAAAAAAATGTTTTCAGTGAGACCTAAGAGTAAAATATGAGCATGATGCCATGAAGAATAGATAAATCTGAGAACAATAAAGAGTTCTTAGAGGAATCAAGAGTAGTAGTACATCTGTGAGTTTTCAGCCTCTTAGTGTTCATTCATTTACCCTGTTTCCAGGAATGGCCGCCAATTTAGGCTCTCCCCTCTCAGTCCCAAAGGGCTCCAGTGGACACTATTCCCCTTCTCCAATGCCAAACAGAACATCAAATAGAATTTCAGTTTTGCAAGAGCCTGTGAACTTATCTCTGTTCTACCACTTTATATATTTTATTGTTTATGTTAATATCTATTTCTCCATATATACCATGAATTCCTGGAAAGCTAGTGTAATGTCACATTGTCTCTTTCCCTAGAGTGTTGCAGAGGGCTTTAATAGAGATAAACTTAAATAAATGTGGATTGATTAAATGGATGACTGAAAGAATGAATATGTGACCAAATAAATGATGAAATGTGAAGTGTGAGCAGAGAGATTAAGGGGTCCATGAAGCTGCTATTGCTCAGAAGAAAGATAATCAAGGATCCTAAGTAAAATAAATAAAGGGGGAGGATAGTTTCCACTCTGGAAAACAGTTTAGCAATTTCTGAAAAAGTTAAATATGAATTTACTTTATGATACAGAAATTCTACTACTAGGTATTAGAAATGAAAACATATGTCCATGCTCAGACTTGTACATAAATATTCATGGAAGCATTATCCACAAAAGCCAAAAAGTGGAAACAAACCAAATGCCCATGTACTGGGTTTAATAGTATCCCCACCCCCACCCCCAATTCATGTCTACCTGGCACCTATGAGCATGACCTTATTTGGAGATAGGATCTTTGCATATGTCATCAAGCTAAAGTGAAATCACACTGGATTAGGGGACCTAAGTCAAATATAACTGGTGTCCTTATAAGAAGAAAGCAATTTGCACTCAGAGACACAGATGTACGGGGGAGAAGGCCATATGAAGATGGAAGTGGAAATTGGACTGAAGTATCTACAAACCAAGGAATACCAAGGAATGCCAAGGACTGCCAGCAACCATCAGAAGCTAGAAGAGAAAATAAGTATCTTCCTCTACAGACTTCAGAGAGCATAACCCTACTAGCATCTTAATTTCAGACATCTAACCTCTAGAACTGTGGAAGAATACATTGCTCATTTTATAACCCATCTAGATTGTGGTCATTTGTTACAGCAGACCCAGGAAACAAATATAGTCTATTAACTGGTGAATGGGTAAACAAAATGTGATAAATCCATATAATGGAATTATTCAGAAATAAAAGGGAATGAAGTACTGATACATGCTACGAAATGGAAGAACCTCAAAAACATTTTTCCTAGTGAAAAAAGCCAGTCATATAATATATGATCCCACTTATTTAAATGTCTGGCAAAGGCAAACCCATAGATATTGAAAGTGATTACCAACAACTGGAGTAAAACCAAATAGTCATTGTAAATGGGCATGAGGTTTCTTTTCAGGGTGATAGAAATATTCCAAAATTGTGGTAATGATTGCACAATTTTGTAAGCATACTAAAATTCACCAAGTTATACACTTAAATTGGGTGAATGTTGTGGCATATAAACTGTATCTCATGAAACCTTTTAAAAATAAGAGGTGCTTCCCTGGTGGCTCATTGGTAAAGAATCTGCCTGCCAGTGCAGAAGACACAGGTCTGGGAAGAAATGGGTTTGATCCCTGGTCCGGGAAGATCCCACATGCTGCAGAGCAGCTGAGCCTGTGTGCCACAACTGTTGAGCCTGAGCTCTAGAGCCTGGGAGCTGCAACTACTGAGCCTAAGTGCTGCCACTACTGAAACCTGTGTGGCCTAGAGTCCGTGCTCCACAGCAAGAGAAGCCACCGCAACGAGAAGCCAGCACACTGCAACGAAGGGTAGCCCCTGGCCTCTGCAACTAGAGAAAAGCGCTCACAGCAACGAAGACCTAGCACAGCCAAACAATAAATGCAGAGATAAAAAATAGGAGTTCCCACCCTCCTACACGATTGATAAGAATGTAAATTGGTGCAGCCACTATGGAAAACAGTACGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTCCTCCAATGCATGAAAGTAAAAAGTGAAAGTGAAGTCGTTCAGTCGTGTCCTACTCTTAGCGACCCCATGGACTGCAGCCCACCAGGCTCCTCCATCCCTGGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCTGGGAAAACAGTATAGAGGTTCCTTAAAAACCTAAAAACAGAGCTACTTTATGATCCAGTAATCCCACTCCTGGGCATATATCTGGAAAAGATGAAAGCTCTAATTTGAAGATACATGTACCCCAGTTTTCATAGCAGCAATATTTACAATAGCCAAGACAAAGTGCCTGTCAACAGATGATTAGTTTAAGAAGATGTGGTATAAATATCCAATGGAATACTACTCAGCCATAAAAAGAATGAAGTACTGTCATTTGCAACAACATGGATTGGCCTAGAAATTACCATATTAAGTGGAGTAAGTCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAAGACAAATATTACAAGTGATAAGTTATATCACTTATTATATTATTATATATGTGGAATCTAAAAAATAATACAAGTGAATCTATTCACAAAATAGAAACAGACTCATAGAAAACAAACATAGTTACCAAAGGGGAAAGGGAGGGTGGAGGGATAAATTAGGAGCATGGGATTAACAGATACAAACATAAAACATAAAATAGATAAGCAATGAGGATTTACTGAATAGAACAGGTATTTATGGTCAGTATCTTATAATAAGCTATAATGGAAAATAATCTGAAAATATACATATGCAACTGAAAAATTATATTTTCTTTTCACATATACCTTTATCATTCTGATTTAATAGACAAACATTTAAAAAAATATATGGGTTCCCATTATCCTGAAACACCCTTCTTTTGTTCGAGCTTCTCCTGGGATCTCTACCTCGAGCACATGGTCAACAAGGAAACTTGAATCATGCCACTGGGACTTCAGATAAGTTAAAGAATAAAATGTTACATTATTTCATAGATTGAGCTAATGAGTAAAAAGAAAAAAAAAACTATATAGTGTTCTTCCAGTAGAGCATTCAGTGTGAAACCTAAACCTTCATCTTTCATTTCTTCCTTTTCCTACTAG
Seq C2 exon
GAACGGGACATCTCTGGGTATCTGGTTGGCAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCCGATCTCAATACCTACATCTACTACAATGAGAAGAACGGAGGCCCCAACCACCACTTGCCCCTTCCAGACAACTGGAAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023941:ENSBTAT00000032932:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.9=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]