MmuINT0041531 @ mm9
Intron Retention
Gene
ENSMUSG00000025196 | Cpn1
Description
carboxypeptidase N, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2135874]
Coordinates
chr19:44048423-44055489:-
Coord C1 exon
chr19:44055293-44055489
Coord A exon
chr19:44048579-44055292
Coord C2 exon
chr19:44048423-44048578
Length
6714 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CCTTTTTCTGTTTCTCCTAGGGC
3' ss Score
11.47
Exon sequences
Seq C1 exon
TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG
Seq A exon
GTACACAGTCCGAGGGAGGTTTGTAAAAAAAAAACTAAGGCCATCTTATGAAATGAGTGCCAGCCTACAGTGTGTCTTATGTTCCATTGTAAATATCAGTTTGGAGGGGAGGGGAAGGTAAAACAGTTGGTGTGCGGGAAGGAAGGGGCAGAAGCAAAGGGTTAAGACTGGTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGAACAGCCAGGGATACACAGAGAAACCCTGTCTGGAAAAAACAAAAAACAAAAACAAACAAACAAACAAAAGACTGGAGAATCCTGACCTGCGCTAGCTCCGCAGGGTGTAATTGTGCAGGCGGCGGTCAGTAGGCACAGTTTGAACCTCTGGTTCCTACACCAGTCCAGCTAACCTCAAGATCTTGTTATGAGAACAGATGTGGAAATTCCTTGACAACACCTTGAAAATGGGGAAATATATCCACCTTCCTGTACTTGTATCCAAAGAGCACAAACTTTCCCCAAATTTTAGGGTGGAGAATTAATTCTAGATGATTGGGGGGTGTGGGGTGCTTTTGAGCTTTAAACATACCAGTCAGTACTCCACCACTGGCCTCTATTCCCCAGCCTTCTTTTTGTTGTTGTTATTCTAAGACAGGAGCGTGAAAATTTGCCTCGTCTAGAACTCACGAAGCAGGTCTTAAGCTTAGAGCCCTCCTGACTCACGCTTCCGGGTGGCTGGGTTCATAGCGGTGCCCACTGTGCCTAGCATGAAAGAATCGTGAACCTAGGAGTGTGGATGGTTCCTAGAAGCCATGGGAGTCAGGGAAAGACTTTCTAAGTCTTGCTGGCACCTCACTGTGTCACCCATCTCAGTCCTCCAAACTCCAGATAAAAAGCTGCCATTGTTTTAAACAGACAAGTTTGTGTTAATTTGCTGCAGCGGCAGTAGGGATCTGTTACACCCTTTGCTCTGTTTCTGGGAACCTGGGAACTCGTTTAAGTGATGTTCTTCCTCCTCCTCTTCCTCTCCCCTCTTCATCCTCTCCCTCCTCCCCTCCCTCCTCTTCATCCTCTTTCTCCTTCTCTCTTCCTGTTGTCTCTCCGATCTGCCTTCTTTTTCTTCTCCTTCCTCTGCCTCACTCATTTTAAGCCAGCCCTGTGACCCCAAGCCACAGCCCCTGTCCCAGAAAGCCCTTCCTTACCAGCCTAATGGCCAGCTGTGTATAAAAATCAACGGGTAAAGCCTGTTGCCGTTAAGACTGACAGTTAAATGGAGAGTAGAGTGTGGAGCAGAAACTGAAGGAAAGGCCATCCAGAGACTGTCTCACCTGGGGATTCATCCCATATACAGTTACCAAACCCAGATACTATTGTGGATACCAAGAAGTGTGTGCTGACAGGAGCCTGATATGGTTGTCTCCTGAGAGGCCCTGCCAGAGCCTGACAAATACAGAGATGGATGCTCACAGCCAACCATTGGACTGAGTGTGGGGTCCCCAATGGAAGAGTTAGAGAAAGGACTGAAGGAGTTGAAGGGGTTTGCAACCCCATAGGAAGAACAATAATATCAACCAACCAGACCCCCCAGAGTTCCCAGGGACTAAGCCACTAACCAAGGAGTACACATGGCTCCAGCTGGATATGTAGCAGGATGGCCTTGTCGCGCATCAATGGGAAGAGAGGTCATTGGTCCTGTGAAGGCTCGATAGATGCCCCAGTGTAGGGGAATTTAGGGTGGGGAGGTGGGAGTGGGTGCGTGAGTGGAGGAACACCTTCATATGCTGGCTCCTTGCCAGCAGGTCCAGGCGAGAGAAGAGAGGTCCCAGTCACACAGGGGTCTCTCTGGGACCGAGTGGGATGGCAGCTCAAAAGAAACACACTGAGCTGTGAGTCTTGTCGAAGCAGGAACTCAACTTTATGGCATCAGCCTCTCGCTTATATAAGTTCAGAACAAGCCGGGTGTGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAAGCAGAGGCAGTCGGACTTCTGAATTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTTGAAAAACCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCAGAACATAGGGAGGGGGATTTTTGGTGGGGTAAGATGACATAGGAGGTGGAGAAGGGTGACAGAAGGTATGGGGTAACTGACAGGGCCAATGGCAAAGCTATATCTCAGCAAGAGACAGGGCCAAACAGGTCTTATTGAGTCACCCCGATACGGAAGTGACCAAGACAGGTCTCAAATCTCGAGCCAGGCTTAGGCTCTTCCACAAGGCCGCAGATGCTCTAGCCAGGCTAGGGTTTGTCCTCAAGGAGCAAACCAGGGCCAAAATGGGGCCCAACATTCATAGAAGCAGGGAAGGGAGGATGGGATAGGGGGTTTCCGGGAGGGGGTAAACTGAGAAAAGGGATAACATTTGAAATGTAAATAAAGAAAATATCGAATTAAAAAAAAAAACACCGGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACAAACAAACAAACAAACAAACAAACAAACAAACAAAAAAGACTGACAGTTAAGAGCTACACTGCTAAGAACGAGAAGCCTAGAGAAAGCCCTGCCATGGAGGGGCACACCCAACATAAAAGTCCACTAAATGCTTGCACTGGAGCAGAAATTATGTAGGTAACTTAAGAGCACATTTTAAAATGTCGTGTTCCCTGTGCAATCTAAGAAGAAAATATGAGTGGGATGCCGTGTGAAAAGGGAAACTCTGAGAGTGAGAAAGATTCTTAGGGAAAGTCTGATGGCAGCCCATCTCTGAACTTCCAATAGGAAATGAGATTGATTTCCATCACTTCCAGGAATAGCCAACAATTTGAGCTGCACCCACTCAGTCCAGAGGACTGTAGTGGGACACTCATCCCCTTCTCCAGTGACACACAAAGTAATTCTAATGACCTCTCCTCACAAACATAAACTTCACTCGGAAACAGGATCTCTTGTAGCCCAGGCTGGTCTTGAACTTGCTATGTGGCAAAGCATGACCTTGAATTTCTGAACCATATACCAGCATGCTGGTTTTCTGCAGTGCTGGGGACTGAACCGAGAGAGGGCTCTGTGCATGCTAGGCAAGCACTATTAACAACTGAGCTAAGCCCCTGCCCTAATGGGACTCCTCACACATCTGTAATACATTTTGTATTTATTCCTGGATGTGTCTAGCTTCCCGTGTGTACCATGAATTCCTATGGGGCTAGAGGAATATCTCATTTCACTCTTTTCCCAGTGTCTGAGGACTTTGGATAGACAACGCATGAGTGAGTGGTTTTTGACTGGATGGGTGAACGAGTCCGTGAGTGGATTCATGAACAAAAGGAGATAAAGTCTGGATCATAAACAGAAAGAGCAAGGCATCCAGGGGTTATGGAGTACTCAGAAGATAAGGCTCCTGATGTTTCATAACTTGGTTTTATTAGCATAAGTTAACTATACATTAGGGTTTCTTGATGTAGTTTTGTATGTGAATATAAAGTATTGTCCTCTCTAACTTGTCCTCTCGAATCTAGTCACCCACCCCTCGACTTTCGTGCCTCTTGCTTGTGTGTATGCGACCCAGTGAGTGTGACTAAGGTTGCTTACGTGAGCGTGGATGAAGGGACAGTTATCGGAGCATGGACTGTTTACTTGTGGCTACAGCACTGAAGAAAGTCCTCTCCACCCTTAACCGTTAACTGCCAAGAACTCTTTAGGGAGGGGTGAGGCCTTGTAAGCCCCTCCTCCCTAGCAACTATTACCTTCCTGTAAATCCTCTCAGAGGGGCGGGGTCTAGGGAATTTTGAGGAGCCCAGCCTTGTGCAGGTCTTACCCAGATAACCACAGCTGCTGTGAGCTCAGTAATTCAGCAGCCCGGCTGTGTCCTGGAGACTCCACAGCACTCCTACATTCCACCCCCATCCTTCTTCCACGGTGTCCCTGGAGCTTCGGAGGGTGACGTAATTATCCTACTAAAGGCTAAGCAGTCAACAGTCCCATCATTCTTAGCACTCTGAAGTCAAGAGCTTCTGTGGTAATAGCTACCCCCTGTAAAAAGACACTTCCCCGACCAAAGCATGAATCTGTAGGCAATCATAGTCAAAAACCAGTGTTAGTGATGTCCTTATAAGAACAAAGCCAGGCATAGCGGTGCACACCTGTGACCCCAACATTCAGGAAGCAGAGGCAGGAGGATCAAACGCTCATAGTCATGGGAGACCTTATCTCATAAGGGAGAAAGGGATGGAGGGAAAGAGGGAAGGAGGAAGGGAGGTAGGGAGAGAGAGAAAGAGAGAGAGAGAGGGAGAGAAGGCAGGATGCGAGATAGACATATTAGTTGTGGTTAGTAACACTTTTTCTGTGACCAAACACCAAGACTAAGGCAACATGCAGAAGGAAACCTTCATTGGAGCATATGGTTTCAGAGCCTTAGAGCCCGCTGCGATAGAGCAAAGTCATAGTAGCAGGAGTAGCTGCGAGCTCACATCTTGGTCTGAGAGCAGAAGGCAGACAGCACTCCGGGAATGGCATGAGTCTTTTGAAACCTCAGACCCCACCCCCAGTGACATACTTTCTCCCTCAAGGCCACATCTCCACAAACTTCCCAAATGGCCACCAACTAGGGACCAAGTATTCAAGTACCAGAGACTTAGGGGGGTTGCCACAGAGAGAAGAGAGAAGAGAAGAAAAACACACAGAGACACAGGCACATTAGGAAGGCCAGGAAAGCTGGTGTGGTGGTTTGAATAGGAATGGCCCCAGTATATTCTTGTGTTTGAATGCGTGACCATAGGGAGTAGTACTGTTAGGAGGTGTGGCCTTCTTAGAGGAAGTATGTCACTGTGGAGGCGGGGCTTTGAAGTCCTAAATGCTCAAGCTACACCCAGTGTGAAACCCAGTCTCCTCCTGGCTGCCTTCGGATCAAGATGTAGAACTCTCGGTTCTTCCAGCGCCATGTCTACCTGCACGCTGCCATGCTTCCCACCCTGATAATGGACTGAACCTCTGAAACTGTAAGGCAACCCCAATTAAATGTTGGCCTTTCAAAGAGTTACCTTGGTCATGATGTCTCTTTGTAATGATGAAACCCTAAGACAGCTGGAAACAAAACGTCACAGTATACATTGTGCATCTAAAAACTAAGGACGGGGCCGGCAAATTGGTTCAGCAGGTAAAGCCACTTGCTCTGAAAGAGTGGGACCTGAGTTCAAACCTTGGAGCCAGCATGAGGTGGGAGGTAAGAGTAACCAACTCCACAAAGCTGTCCTCTGACCTCCACATGTGCTCTGGGTCATGCATGCCCCCCTCCCCCAATAATAAATAAAACATAATGTCAAGGATTGCCTAGGACCACCAGAAACTAAAACCCACAAAGTCATCAGAGAGCATGACCATGATGCCTGGGTTTTAAGTTTAACCCTTCAGGTGTGAGAGAGAATTCATGCAGCCTCTTAGCTTGTAACTAGTTACAGCAGCCCTAAGAACCTGACATACACTGTCAGCTGGTGGATGGATGGATGGTGGCGAGTCCGCACCACACAGAAATGAAAAGGGGAGGTACCGGGACATGCTACATGGGTGAATCTCACATGCAGAACACATGATGTATGATCCCACTTACACATAACATGCACAGAGAAGACAGAATATAGTCACAGCGCCGGGGTAAAAATAAGCAACTGTGAACCAGGCGGTGGTGGCACACGCCTTTAGTCCCAGCACATGGGAGGCAGAGGCAGGCAAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATAGAAAGAAACTCTGTCTTGAAAAACTAAAAAATAAACAAGTAAATAAATGAAAAATAAAAATAAATAAGCGAATGGTAATGGGCTTCATTTTTAGGGGGACAGAGAGGCTCTACAATTACAGTTTTGTGATTTCAGAATAATTGTGAGGGTGATGGTGTTGGTCTCGCTCTATGGGCACGCTAAAACTCATTGAATTGTCTTCTTTAAGCAAGCAATTCTGTGCCGCTCTCTTTACAAATCTAGGGGTTGCTCCCGCTAGAGCTTCTCACGGGAGCCCCCAGAACTTTGAATCCCCGCCCCCCGCAAACTGGGACACTGGAAGCCGGAAGGTGACAATAATGCCTCACCATTTCATAGAAAAGCTAGTGTGTTGGTTTGGATGAGAAATCTCCCCCGTAGGCTTGTGTCTGTGAGCACTTGGTCTCTCCGTTGATGGTGGGGGAGGCTATGGAGCCTTCTTTAGGAGCTTGCTAGAGGAAGTGCATTGCTGTGGGTGTGCCTTGAGCATGTACAGCCTCATTCTATTTTCTGTTCTCCCTCACTGCTTCCTGTGTGTATTAAATGTGATCAGCTAGCCTCCTGCATCTGTTACCATGCCCTGCCTTCTGGGCCATTATAAACTCACTCTTTCCTCTGTCCATTTGTCTGTCCTTCCCTCCCTCCCACTTCGGAACCATTTTTTCTTAAGCTGATTTTGGTACTGCTATTTTATCACAGAAATAGAAAAGTAACTAGTGTAACTAGTATTTTTTAAAAGTTACACCATGCTCTTGAAATACAGGACTCTGTTTTAAACACTCATTTCTCCTTTTTCTGTTTCTCCTAG
Seq C2 exon
GGCCCAAACATGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGCAACTTCCCGGATCTCAACACCTACTTCTACTACAACTCCAAGAACGGTGGCCCTAACCACCACCTGCCCCTCCCCGACAACTGGAAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025196-Cpn1:NM_030703:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=NA C2=0.173
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.7=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: