DreINT0051670 @ danRer10
Intron Retention
Gene
ENSDARG00000075521 | cpz
Description
carboxypeptidase Z [Source:ZFIN;Acc:ZDB-GENE-090313-267]
Coordinates
chr1:40106798-40109177:+
Coord C1 exon
chr1:40106798-40106994
Coord A exon
chr1:40106995-40109015
Coord C2 exon
chr1:40109016-40109177
Length
2021 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCC
5' ss Score
6.17
3' ss Seq
GGAATCTGTCACCTTTTTAGGGT
3' ss Score
8.19
Exon sequences
Seq C1 exon
TGGAGCCAGAGATCAAATTAATTGGAAACATGCATGGAAATGAGGTTCTGGGCCGACAGCTTCTGATATACCTTGCTCAGTATCTGTGCTCCGAGTATCTGCTGGGCAATGAGCGAATTCAGACCATCATCAACACCACGCGCATCCACATTCTGGCCTCCATGAATCCCGATGGCTATGAGATTGCCGCTTCTGAG
Seq A exon
GTAGCCGATAGGAACGACCCCGAAAACATCTACCAGGAAGTAAATATTTTGTTGTCTGAGTCTGTCTGCCTGTCTGTTTGTTGGCTGACCGACCGATCCAAGCTCCCTGCACCAGAGAGAGTCCTCCAGAACAGGTCAGACCTAGGAGGAAGTCCATATAAGGGCAAACACATGCTAATTTGAGGATTGGCATAGTTTTTCATTGCCTATGAAATCATGGAAATATAAATAAGGTATGAACTGAAAATATATGAAAAGCTATGAAGTGAAAAAGGACAACTGGTAGAGGGAGGCCTTGACTAACCACTATTAATGGACAATTGTCTGTCAAATAACATTGCAGTATTTGAACTCATAGTAATTAATCTTAAACCTCTTGAAATGTCCAGACCGATCACTACAGGTGATATTTAAAGGGGTGGTCCGCTACGATATTATATTTTAAACTTAAGCTGATGTGTAATGTAGCTGTGTGAACATCTCTCAATGTAAGACGCTCAAAGTTCAATGCAAAGGGAGACATAGAGTTACACAGCTACAGATTTAGCTTAGCAAATCCTGCAGCGAACGAATTTGGGGACTACAGAAAAATACATCCGGGTTAATGAAATAATAAACAAACAGCTAGCCTTAGACTTAGAAGAGCTTCCTAAATCTCTTCCAGGTCAGTGCTGTATTTGGTTAAAAACTCCTCCAATTGACGAAGCTCTGGACTGTGAGCCACAACATGCACGTATTTTTATTTGTTAAAATTGATAAATTACATGCAGTTTCTAGTGTTAATGGTATGTTGTAGGGAGGACGTAAACAAGGATGTAAACAACGGGAAATGCTGTTTTTCACTGCTAACAGTTAACTGTAGCTACAAATTCAAACACCTGTAAACACTCACAATCTTTAACAGCGCTTTAGTGTCTCTCTATGCAGACATTTTCCATGCGTTATACATCTTAAATTACAAACTCGCAAAAAATATGTGAACGTTTTATATTACTTACACATGCTTGTTTCAAATGTATGTGAAAGATAGTTGTCAGATTTTATTTTAGAAAGAGGTTTGTGAGGTGTGCTCAGGCGTGTGCTCTGATTTTCCGTCTGATTCAGGCAGCTAAAGCTGCTAACAATTTCTCTGTTGTTTACACAGCGCTAAAGTGCGTGCTTGAAGGGGCGTGACGTGATGATGTGGAGTCGATCCACGAATCACAGCACATTAGGTAGCTGACCAATCAGAGCCTCTTGAAGGTGGGAACTAGAAAATATGACAGTCATTTGTTTAGATTTTTAGATGTATGAAAAAATAACGTGATTTTCTACAAGTGAAGCATGAGCACACATTGCTTTACACCTTATAAACATAACCAAGCCTTAAAAATATACGTTGGATCACCCCTTTATGATTCAACTATATTGAGTTAAAACATTTGTGTGATTGGATTAAATTCAAATAATGGTAAGTAATATTAATTAATTATTGATTTAAATATTAAATTTCCCAAAATAGTTAAATTCAGTAATATAAAATGGAATGAACCTTTAATAAGAGGACAAAACCGTGTTGGTCAATTCGTTTAACACTAACTGACATAACTTTGCCTTGTTTATGTATTTTCATAGACTATCTTCAGTCTTTAACCCTCTTTTGATGTTCGTTCCTAATGTCTGTCTGTGCTTTATCACATAGAAATGTAGAAAAATTTTGTGGTCCGTTGAAAAATTATAATTTGGTGATTATTTGCACATTCTCATTTAGTTCCAAACCTGTTTGCGTTATTTTCTTCTGCAGAACATAAAAGAAGATCAAACTAGTTTCATTCTCATTGATTTCTATTGAAGTTTGTTTGAAAGTGAATCCATATGCTACCAACATTCTTCAAAATACAATTTTTTTGGTTTTTAGTTAGCCACAAGGATAAAAATACTTTCTGGTTTGGAACAATTGAGGGTGTATAAATAGTGACAGAATTGTCATTTTATTTTGTGATTCTTTTGTTATTTACTGGTGGAATCTGTCACCTTTTTAG
Seq C2 exon
GGTCATGAGTACAATGGATGGACCAGTGGCCGGGCCAATGCGCAAAATCTTGATCTGAACCGCAACTTCCCTGACCTCACATCCATCTTCTACAACCGGCGTCGTTTTCGACATTTTCGTAGTGACCACATCCCCATCCCTGACTCCTACTGGATGAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075521:ENSDART00000147497:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.5=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]