MmuINT0041952 @ mm9
Intron Retention
Gene
ENSMUSG00000036596 | Cpz
Description
carboxypeptidase Z [Source:MGI Symbol;Acc:MGI:88487]
Coordinates
chr5:35854352-35855256:-
Coord C1 exon
chr5:35855060-35855256
Coord A exon
chr5:35854514-35855059
Coord C2 exon
chr5:35854352-35854513
Length
546 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGA
5' ss Score
4.3
3' ss Seq
GTCTGGGCCCTTGTGTCCAGGGT
3' ss Score
5.73
Exon sequences
Seq C1 exon
TGGAGCCTGAGGTGAAGCTCATTGGAAACATTCATGGCAATGAGGTGGCCGGACGGGAAGTGCTCATCTACCTGGCCCAGTACCTGTGCTCGGAGTACCTGCTGGGCAACCCTCGCATCCAGCGCCTGCTGAACACCACCCGCATCCACCTGCTGCCATCCATGAACCCTGATGGCTACGAAGTGGCAGCTGCAGAG
Seq A exon
GTGGGAGTTCCCGCTGCCTTCAGAAGGGCTGCATCCTCCCGCACTCTTAATCTTTGACTTTACTCATCATTGTTGAGGTTCTGTTTGCAGCCATCTCTCTAGGTGATCAGGGCCAAGCAAGCAGTGGTCCTGCAACATTCTGCCTGCTGGATGAGCAGAGCTGTGATGTCTTGTTTTAGGACAGGGCTGGGGATGTAGCTCAGTGGTAGAGTGCTTGCCAAACATGGAAGATAAGAAAGAGTCCCAAGGAGAGAGTGCACTGGTGGAGGACTAGGGAAGCTCACTAGGAGGGACAGAATGACATGGGCAAGAGTCAGTGGAGGCAAGAGGCTATGCAGGGGGCAGGTGTTCTACCCATGGGAGAATACTTCCAGACCATGATGCTAGGGGTGAGAGAAAGGCCATGTGGAGGCATAGGAGGTGGGAGGAAGGGTAAAGGTGAAGCCATAGGAGCCATGGTCCCGCTTGAACCTCAGTCCCACTGAAGCCTGAGCTGGGAGGCGTGGGATGGGAGATGTTGATCCTTGTCTGGGCCCTTGTGTCCAG
Seq C2 exon
GGTGCTGGATACAATGGCTGGACCAGTGGAAGGCAGAATGCACAGAACCTGGATCTGAACCGCAACTTCCCTGACCTCACGTCAGAGTACTACCGGCTGGCCTCGACTCGTGGTGTGCGCACAGACCATATCCCCATCTCACAGTACTACTGGTGGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036596-Cpz:NM_153107:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.5=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGGTGAAGCTCATTGG
R:
ACCCCACCAGTAGTACTGTGA
Band lengths:
352-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: