RnoINT0041738 @ rn6
Intron Retention
Gene
ENSRNOG00000008947 | Cpz
Description
carboxypeptidase Z [Source:RGD Symbol;Acc:620496]
Coordinates
chr14:80415744-80416683:+
Coord C1 exon
chr14:80415744-80415940
Coord A exon
chr14:80415941-80416521
Coord C2 exon
chr14:80416522-80416683
Length
581 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GACTGGGCCCTTGTGTTCAGGGT
3' ss Score
6.3
Exon sequences
Seq C1 exon
TGGAGCCTGAGGTGAAGCTCATTGGGAACATCCATGGCAACGAGGTGGCAGGACGGGAAATACTCATCTACCTGGCCCAGTACCTGTGCTCCGAGTACCTGCTGGGCAACCCCCGCATCCAGCGCCTGCTGAACACCACCCGCATCCACCTGCTGCCGTCCATGAACCCTGATGGCTACGAGGTGGCGGCTGCAGAG
Seq A exon
GTAGGAACTCCCGCTGCCTGCAGAAGGGCTGCCTCCTCCAGCACTCGTAACCTTTGACTTTTACTCCTCATAGTTGAGGGTCTATTTGCAGCCGTCTCCCTAGGTGAGCAGGGCTGAGCAAAAGCAGGGGTCTGGCGACATTCTGCCAGATGGACGGGCAGGATGTGTACTGAAAGAGCAGAGCCGTGGCGTATTGCTTTAGGACAGGGCTGAGGATGTAGCCAAACATGCAAGATAAGAAAGAGTCCCGAGGAGAGAGTGTGCTGACGGAGGATTAGAGAAGCTCTCTAGAGGAACGGAGTGACATGGACAAGAGCCAATCTCTAGAGGAACAGACATGGGCAAGAGCCAATGGAAGCAAGAGGCTATGGAGGGCACAGGTGTTCCGTGCATGGGAGAATACTTCCGGGCCATGATGCTAGTGTTGAGGGAAAGGATATATGGAGGCGAAGGAGGTGGGAGGAAGGGCAAAGGTGAAGCCACAGAAGCCACAGTCCTGCCAGAACCTCTGTCCAGCTGAAGCCTGAGCTGGAAGACGTGGGGTGGGAGATGTGGATTCTTGACTGGGCCCTTGTGTTCAG
Seq C2 exon
GGTGCTGGCTACAACGGCTGGACCAGTGGGAGGCAGAATGCACAGAACCTGGATCTGAACCGCAACTTCCCTGACCTCACGTCAGAGTACTACCGGCTGGCCTCCACTCGCGGTGTGCGCACGGACCACATCCCCATCTCGCAGTACTACTGGTGGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008947:ENSRNOT00000012109:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.5=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGGTGAAGCTCATTGG
R:
TACCCCACCAGTAGTACTGCG
Band lengths:
353-934
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]