GgaINT0077521 @ galGal3
Intron Retention
Gene
ENSGALG00000015597 | CPZ
Description
NA
Coordinates
chr4:84166170-84167482:+
Coord C1 exon
chr4:84166170-84166366
Coord A exon
chr4:84166367-84167320
Coord C2 exon
chr4:84167321-84167482
Length
954 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GCTTCCGTGTTACATCTTAGGGT
3' ss Score
7.75
Exon sequences
Seq C1 exon
TCAAGCCAGAATTTAAGTACATTGGCAATATGCATGGAAATGAAGTTGTGGGAAAAGAACTGCTGATATACCTTGCGCAGTATCTGTGTTCAGAGTATCTTCTGGGGAACCCTCGCATCCAAACTTTGATCAATAACACCAGAATTCATCTCCTGCCTTCACTCAACCCAGATGGGTATGAACTGGCTGCAGAAGAG
Seq A exon
GTAAGAGACTTTTTATAAATAAATGTTCAGTGCTTCCTGTTTCTAAAATTCCCCCTAGGAAAATACAAACTTTAAGTGAAGCAGTAAGTATGGGACAGAGTGCTAATAACCAGCAGCTGGGCTCCCAGGCTGCTATGGGGGTAGGTTGCTTTCTGAAGACAGTGTGAACAGACCTTCAAAGCAACCAGAGCCATGTTTGCCATTTTTCCTCCCTGCGTGCATTGACGTGGGAATGACTGTGCTACTTTTTCACACATTTCACAGTCTCTGTTATCAGTTCTAGAACAGGATGCCCACTGACTCACTTTAATGACTTTTAAACTAATTTGTAAGGAAACGTAATTTAATACTGTGGAATAGACATTATTCCTCTTGTAGACTAACAGATGTAATAAAATGGTAATGTGGTCTGTACTTGACAGCTTTCAGAGATCAGCTGATGTCTGAAGGAGATGTATGAAAGCAACACTTCTGATAGATGTTATGTGGCCTTCTTCTTCTTTTTACCTCCATTCTATCAGTAGCATAATTAGCATGAAACATGAAAACAGGACTTCCTTTTTTTGAGTTCCTCAAGTGGTGAGCTCTACCTATTAGAATGATACTTGGGGTATTGCGTTCTGCCTGAACTTTTCTTTGAGCAAGAGCTGTAATGTTTTTTTTTTCTTTTCTTCTCTTCTAACCCACTCTGCATGTTGCTCTGTGTTGAGTAAGAAACTGCTGTGCTCCTCTCATGAGTCACATCACTGGTGAGTGAAATAGCTCTCGTGCTAGTAAGGGCAATCTCGGGGATAAGAAATGATTAATAAGTGTGGCTTTTTTTGACTTCATATATATTTTTAGCTTATCTCTGATATATTCTAAAACGTAACATTGCTAATTATAAAATGAAATTTTAAACACATCCTTTTCCCACAAAGTTATACTGAACTGGGCTTCCGTGTTACATCTTAG
Seq C2 exon
GGTGCTGGTTACAATGGATGGGTGATTGGCCGGCAGACAGCTCAGAACTTGGACCTGAACAGAAATTTCCCTGATCTGACTTCAGAAGCTTACAGAAGAGCTGGGATTCGTGGGGCCCGCTTGGACCATATCCCCATTCCACAATCCTACTGGTGGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015597:ENSGALT00000029738:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.5=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.7=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAATTTAAGTACATTGGCA
R:
CCCCACCAGTAGGATTGTGGA
Band lengths:
352-1306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]