HsaINT0041104 @ hg19
Intron Retention
Gene
ENSG00000109625 | CPZ
Description
carboxypeptidase Z [Source:HGNC Symbol;Acc:2333]
Coordinates
chr4:8607716-8608625:+
Coord C1 exon
chr4:8607716-8607912
Coord A exon
chr4:8607913-8608463
Coord C2 exon
chr4:8608464-8608625
Length
551 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGGGTTGGCCATGTTTTCAGGGT
3' ss Score
4.94
Exon sequences
Seq C1 exon
TGGAGCCCGAGGTGAAGCTCATCGGCAACATTCATGGCAACGAGGTGGCGGGCCGGGAGATGCTCATCTACCTAGCCCAGTACCTGTGCTCTGAGTACCTGCTTGGTAACCCCCGCATCCAGCGCCTGCTCAACACCACCCGCATCCACCTGCTGCCCTCCATGAACCCTGACGGCTATGAGGTGGCAGCTGCCGAG
Seq A exon
GTGAGCGCCCAGATGCCTGGATCCTGTGGGCCACCGCCCGAACCACCCCCTCATTCATCCATTTATGAGTAGTTTATCCCAGCAGTGCTTCGTTCCTGCCTCTCTAGGAGAGGAGCATTCAGCAGGTGTCGATACTGGCAAACCCCTGCTTCAGGGGCTGGGGAGAAGGAAGGCACTGAGAATTCTAGGTGAATTAAAAAGGTGATGCGTGTGATAGAGGAAAATGATGGAAAGGGAGTCGATGGTGCCCGTGTGTGTCAGCGGGGGGTCAGGGTAGCTCTCGGGGAGGTGGGCAACGAGCAGAGCAGGTGACTGTCGAGGGCGCCCCACTCAGGGGGAGCAGCCAGGGAAGGCCCCAAGGCTGTGACATCAGCAAGGAGCCCCGGGGTGGAGAGGAGGCCAAGGGTCAGGCATGCCCCCGAGCTCATCACATAAAGCCGGGGGAAACCGCAGCCCCTGGCCTTGACCCTCAGCCCAGCGTGAGACCCATCTGGAAGGAGGAGGGTGGGGTGTGCTGACCCCACCCAGTCGGGGGTTGGCCATGTTTTCAG
Seq C2 exon
GGTGCCGGCTACAACGGGTGGACGAGCGGGAGGCAGAACGCGCAGAACCTGGATCTGAACCGAAATTTCCCGGACCTGACGTCCGAGTACTACCGGCTGGCGGAGACCCGCGGCGCACGCAGCGACCACATCCCCATCCCCCAGCACTACTGGTGGGGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109625-CPZ:NM_001014447:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.5=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAGCTCATCGGCAACAT
R:
CTTACCCCACCAGTAGTGCTG
Band lengths:
349-900
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)