RnoINT0041355 @ rn6
Intron Retention
Gene
ENSRNOG00000013439 | Cpn1
Description
carboxypeptidase N subunit 1 [Source:RGD Symbol;Acc:70931]
Coordinates
chr1:263749870-263757551:-
Coord C1 exon
chr1:263757355-263757551
Coord A exon
chr1:263750026-263757354
Coord C2 exon
chr1:263749870-263750025
Length
7329 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
CTCTCCATTTCTCCTCCTAGGGC
3' ss Score
10.87
Exon sequences
Seq C1 exon
TGGAACCGGAAGTCAAGTACGTGGGGAACATGCACGGGAACGAGGTGCTGGGCCGCGAACTGCTGCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGGAACCAGCGCATCCTGCGCCTCATCCAGGACACCCGCATTCACATCCTTCCATCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG
Seq A exon
GTACGCGATCCGAGGGAGATCTGTGAAAAAACTAACGACATCTTATGAAACGAGTGCCAGTAGGCAGTGCGTCGTATGTTCTGTTGTAAATATCAGTTGAAGAAGAAAAGGTATAACTGCTGGGGTGCAGGAAGGGGCAAAGGCTTAAGACTGGAGAACCCTTTAGTGCTCTAGCCCTGCAGGCGGTTTAAGCGCTCAGGCAGTAAATAGACAGGCGCTGTTTGAACCCCTGATCCCAACACCAGCCCAGCTAACCTCAAGATCTTGTTATGGGAACAGATGTGGAAATTCCTCTGCAACGCCTTGTAAATGGGAAAATATACCCACCTTCCTGTACTTGTAACCGAAGAGCACAAACTTTCCCCAGATCTTGGGGGGGGGGGGGACTAATTCAATTCTAGATGATTTTTTTTTTTTTGGCCTATTGAGACTTTAAACGTGCTAGTCAGTGCTCCTCCACCGAACTACATTCCCCAGCCTTCTTTTCATATTTTTTTAAATTCTGAGACAGGAGCTTGAAAATTTGCCTAGGCTAGAACGCACGAAGCAGGTCTCGGGCCTAGGACCCTCCTGACTCAGGGTTCCAGGTGACTGGTTTTAGCGGTGCCGCTATGCCTAGCATCAGTTTCTGTGGAGAAAGAATCATACACCTAGGAGTTGGGATGGTTTCTAGAAGTCATGGAGGTCAGGGAAAGATTCCCTCAAATCTTGCTGGTGCATCACTCTGACCCCCATTTCGGTCCTCAGAACTCCAGATAAAAAGTTGCCATTGTTTTAAATGGACACGTTTGTGGTAATTTGTTGCAGCAGCAGTCCGGATCTGTTACACCATTTGCTCTGTTTGTGGGAACCTGGGAACCTTCCTTTAGGTGATGCTATTGTTCCTCCTCCCCTCCCTCCTTCCTTCCCTCCTCCCCTCCTCTTCCTCCTCTTCCTCTCTTTCTCCTCTTCTCACTCCTCCTGTTCTCTCCCCACTCTGCCTTCTTTTTCTTCCCCTTCCTCTCTTTTGGCTCTGCTAGAGATGAAATCCAGAAACCTCACACATTCTAAGCAAGCCTTCTGACACCAAGCCGCAGCCCCCATCCCAGAGAACCCTTCCTTACCGGCCTGACTAATGGCCAGCCGTGTACAAAATCAAAGGGTAAAGCCTGTTGCCATTAAATTGACAGTTAAGAGCTACACTGCTAAGAACAAGAAGCCGTGAGAAAGCCCCTGCCCTTGAGGAGCACACCAAACTCAAAAGTCGGCTAAACGTTTGCACTGGAGCAGAAATTATGTAGGTACCTTAAGAGCACTTTTTTTTTTTTTTGGTTCTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCAAGAGCACTTTTTAAAATGTCATGTTCCCTGTGCAATCCAAGAATAAAATATGAGTGGGATGCCATGTAAAAAGGGAAACTCTGAGAATGACAAAGATTCTTAGAGAAAATGTGAATGGCAGTCCATCTCTGAGTTCCCAATGAGGTTTATTGGCACCCCTTCCGGGAATAGCCAACAATTTGAGCTGTACCCACTCAGTCCACAGGGCTGTAGTGGACACCAGCCCCCTTCTCCAGTGACACACAAAGTAATTTTTTAACTTTATTCATTGTGAGTGTGTTTACATGCCACGGCCCAGGGGTGGAAGAGGACAACTCGTGGGAGTAGGTTCCCCTTCCACATCAGGTCATTGGTGTTGGCTGCAAGTGCTTTTACCTGCCACGTCACTGGCCTGAGATCTTATTTTAATCTATAGAGTCAACTCCATACCATCAAAAAGAGAGTTGCATTTGCTTTTTAAGTTCCCACAGACCAAACGGCAAAATAGAATCTGCATTTAGAAGTGGACCTGCTACCCACACCAGTACAAGTTTATTGGAATTTGGAATGTAAGCAGATGTTTTCAAACAATCCAACCTTATAAAAATGTATGGCATTATGAAATAGTCACTGAAGAGACCCTAGGTATGATGTGGTGGGTATCTCAAGCATGTTAGGTCCCCAGTGACTGAGGCGTGACTGTAGCCAAGGAGACGGGACTAGCTGGCAAACCATGTCAGTGACCAATTCCACAAGTGAAATCAGCCCTATTTAAACACACACACACACACACACACACACACACACACACACACACACACACATGCACACACACAAACAGAACACAAAGTTCAGCTTTTTGCAAATATGATGGTTAGCACAGGGATCTATAAAGCTTTGACACTTGCTCCAGGAGCCCCACTCCCTCCCGCCAGCCATGGCCATCGCTCTCCAGTCAGCTGCAGGAGTCACGGGACGCCTTACGCTCAAGCCAGTGCCTGCATGCAAGAGACTTCTTTGCCATCGCATTCGTGTATGACCTATCAGAACTGCAGATGCCCACCATCCTGACTGCAGCCAGACCTGTTGGTCACAGGGTTAAAAAGAGGGAAGATGGTGTGTGCCTTTCTGCACCCGTGAGGGCTTTCCTGAATAAACCCTAATGGAACGTTTTCCTCCCTCTTGGACGTGCCTAAAGACTAACTTTCCAGCTGTAGCTATGGTTGTGAACTAAAACAGTCTTTGTTTTAAAGTGATGCATCAAAGTAGCATCCTCACAAAGATGTGCTGAGAAGTGGTAAGGTTTTCCTCACAAGCCCAAGGGGGTGGGGGGGGGGGAGCGTCAATTCTCCAGGCTTCATCCTGCTGTGGTAAGACCACTGGAAACACAGTGTTCTCAGCACAAGGCTGGGACTGCTCCTTCACCGCCCGGTAGAAGTATGGGTGCTCCATGGCCTCTCTGGCGGTCAATCTTTGTTGATGGTCATAACTGCTGGAGCTTGTCAAGAAGATCTAGGGTCTCGGGGCTGACAAGGTGACTGTTCTCACTATGGATAAAGTTTTCCCTGCGCTTCTATGAATGTTGTCCCAGGATATCATTGAAGTGTGGACCTAGGTCTATGTGGTACTTCTTCAGATATCCATACAGCTCATCTGTTCCCAGAGCCTTGGCAATTCCAAGCTGGTCATAACTGTCCTGCCCATGGAAGGACGGCTCCTTTCGGAATAGCATGCTTGCTAACATACAGCCCAAGCTCCACATATCCAAGTTGTAGTCCTACACCTGATAGTCCACAAGGAGCTCTGGTCCCATGAAGTACCTCGAGGCTACTGGAACACTACTTCTGAGCAGAATGGTAGAACTCCACCAGACCCCGGTCAATCAGTCGGAGGTTTTTTCGTTGGTGATCTATCCTGACATTGTGAGGTTTCACATCCCTGAGCCTGGTTCACTTGCTGTGGAAGTAATCCAGAGCTTTAAGTAGTTCATACATATAAAACCAGATGTCAGAGTCAGTCAGGATAAGGTAGAGTTGCTTAAAATCTATGTTATTGATATATTCAAATACCAAAGCTGGTGTCCTTGACACTGGGTCCTTTACAGTGTCGATCAGCTTAATGATATTTGTTCCACCATGAAGGTTCTCCAGAATCTTAACCTCTCTCTCATTTTATCTTCTTTTTCTTCACTGGCTTGAGAATTTTTACAGCCGTCCTCTCATTGTTAGCAATGTTAATGGCCTCAAATGCTTGACCCAACCAAGTTTTGATTACCCCAGCTGAGGAGGTGGGCTCCACAGTCCCAGTACTCATGGGTCCTCAGGCTGCTCACAGCGTAGACACTGGCTTGACTAACCACGGCCGGGTTGGGGTGGGGGAGGGGAGACAGAAAGTAATTTTAATGACCTCCCCCCACAATATACACTGCACTCTGAAACATATTGCCCAGCCTGGCCTTGAACTTGTGATGTGGCAAAGCATGACCTTGAGCTTCTGAACCGCATGCCAGCATGCTGGTTTTCTGCAGTGCTGGGGACTGAATGGAGAGAGGGCTTGCTAGGCAAGCACTTTTAATAACTGAGCTAAGCCCCAGCCCTAATGGGAATCTTAACACATCTGTATTATACCATTTTGTATTTATTCATGGATGTGTCTAGCTCCTGTGTGACTATGAATTCCTATGGGGCTAGAAGAATATCTCACTTAGCCCTTTTCCCATTGTCTGAGGGCTTTGGATAGACGAAGCGTAAATGAATGGTTTTGGACTGGATGGGTGAGTGAGTGGGTGAGTGGATACACAAACAAAAGGAGATAAAACCTGGACCATAAACAGAGAAATCAAGGCATCCAGGAGTTACTCAGAAGATAAAGCTCCTAATGTTTCGTAATTAGGTTTTATTAACATATGTTAATTATACATAAGGGTTTCTTGATGTAGTTTTGTACATGTGTCTAAAGTATTGTCCTCTCTAACTTCTGCTGTTCTCCATCCCCCCCACATGTAATCACCCCTCAACTTTCATACGTTCATGCCTCTTGCTTGTGTGTATGTGACCCAGTGGGTGTGTCTAGTGTGGGTGAAGGGTCAATTATTGGAACATGGACGTTTTACTTGTGGCTACAGCACTGAAGAAGGTCCTCTCCACCAGTAACCATTAACTGCCAATAGCTCTTTAGGGAGGTGAGGCTTGTAAGTCCCTCCTCCCTAGCAACTATTACCTGCCTGCAAATCCTCCAAGAGGGGCGGGGTCTGGGGAATTTCGAGAAGCCCAGCCTTGAGAAGGTCTTATACAGATAACCACAGCTGCCGTGAGTTCAGTAATTCAGCATCCGCGTCGAGTCTTGGAGATAGCATTCCATGGCGCTCCTACATTCCATCACTTCCTTGGTGTCCCTGGAGCTTCAGGAGTGACACAGTTATCCTACTAAAGGCTAAGCAGTCTAAAGTCACTTATTCTTAGCACTTTGAAGTTATGAGCTATCTCCCTTGTAAAGACACTTCCCTGACCAAAGCATGAATCTGTAGACAATCATAATAGAAAAACCAGTGTTATTGATGTCCTTATAAGAAGAAAATCAGGCATAGCAGTGCACACCTGTGACCCCAACAATCAGAAAACGGAGGCAGGAGGATCAAAAGCTCATAGTCATCCTTAGCTCTATAGCCAGTTTAAGTCCAGACTGGAATGCATGAGACCTTATCTCATAAGGGAGGAAGGGAGGGCAGGGTTCGGGATAGATATATTAGTTGTGGTTAGTAACAACCTTTTCTGTTACTGTGACCAAACACCAAGACCAAGGCAACTTATAAAAGAAAACGTTCATTTGAGCCTACAGTTTCAGAGCCTTAGAGTCCACGATGCTAGAGCAAAGGCATGGTAGCAGGAGTAGCCGAGAGCTCACATCTTGGTCTCCAGGCAGAAGGCAGAGAGCATCCTGGGAATGGCTTGGGTCTTTTGGAACCTCAGACCCCACCCCCAGTGACATACTTTCTCCAGCGAGGCCACACCTCCCCAAACTCTCCAAACAGCCACCAACTAGAAACTAAGTATTCAAATACCAGAGACTTAGGGGAACTGCCACAGAGAAGAGCGAAAAGTACAGAGGCACAGGCACATTAGGGAGGCCAGAAAAGCTGGTGTGGTGGTTTGAATACATTCTTGTGTTTGAATGCTTGACCATAGGGAATGGCACTATTAAGAGGTGTGGCCTTACTGGAGGAGGTGTGGTCTTGTGGAGGCGGGGCTTTGAGGTCTTAAATGCTCAAGCTGCACCCAGTGTGAAACACATCCAGTCTCCTTCTGGCTGCCTTTGGATCAAGATGAAGAACTCGAGGCTCCTCGAGCACCATGTCTGCCTGGACACTGCCATGCTTCCCACCATGATGATAGTGGACTGAGCCTCTGAAACTGTAAGGCAATTAAATGTTTGCCTTCTTAAGAGTTGCCTTGGTCATGATGTCTCTTCATGAGTCAGTGAAACCCTAAGACAGCTGGAAGCAAACCTTCACGGTATACAATGTGCATCTGAAAGCTAAGGACTGGGCCAGCAAATTGGTCCAGCAGGTAAAGCCACTCACCCCGAAAGAGTGGGACCCGAGTTCAGTCCTTGGAGTCAGCATAAGGTGGGAGGTAAGAACCGACTCCACAAAGCTGTCCTCTGACCTCCATGTGCGCTCTGTGCCATGGATGCCCCCCACAATAATAAATAAATTTAAAGTCAAGGGTTGCTTAGGACTACCAGAAACTAAAGAGCACAAATCCTTCAGAGAGCATGACGGCAATGCCCTTCAAGTCCAAGAGAGAACACACACAACCTCCCGGCTTGTGGTAATTTGTTACAGCAGCCCTAAGAACCTGACATATACTGTCCGAGGCTGGATGGATAAACGAAGCGTGAAGAATCCGAAGGGTGGAGGAAGGAAAAGGGGGAAGTACCGGGACATGCTACATGGGTGAATCTCACGTGCAGAACATATGACATATGATCCCACTTACATATAACACGTACAGAGAAGACAGAATACGGTCACCCAGCACCGGGGTAAAAATAAGCTACGGCAAACGGGAACGAGCTTTATTTGTAGGGGGACAGAAATGCTCTACAATTACAGTTTATGATTTTAGAATAATCGTGGGGGCAATGGTTTTGGTCTCGCTCTGTGGGCCTACTAAAACTCATTGAATTGTATTCTTTAAGCAAGCAGTTCCTTGCAGCTCTCTTGAAAAATCTAGGAGTCACTCCTGCTAAAGCTTCTCCTGGGATCCCTTAGAACTCTGACCGACCCAACTAGGACACTGGAAACCTTAAGGCGATAGATAATACTGCCTCACTGTTTCCTAAATAAAGCCAATGTGTTGGATTGAACGAGAAATATCCCTCATATCTCATGTGTTTGAACACTTGGTTCCCCATTGGTGGTACTTTGGTGGGGGGCGGGAGGGGAAGCTATGGAACCTTTGAGTGCTTGCTGGAGGAAGTCCATTGCTGTGGGTGTGCTTCAAGAATGTAGAGCCTTCTCTATTTTCCGTTCTCTCCCACTGCTTCCTGTGTGTATTAAATGTGATCAGCCTCCTATATCTGTTACAATGCCCTGCCCTCGGAACCATCGTAATCTCACTCCTCCTTCCATATGTCCATCTGTCTGTCTGTCCATCCCTCCCTCCCACTTTGGAACCATAAGCTAAAGTAAACCGTTTTTTCCTTAGGTTGATTTTGGTCATGGTATTTTATCACGGAACTAGAATAGTAACTAGTATTTTTAAAAGTCACACCACACTCTTGAAGTATACGACTCTGTCTTTTTTTTTTTTTTCCCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGTCAAGTGCTCTACTGCTGAGCTAAATCCCCAACCCCTACGGCTCTGTCTTAACCACTCATCTTTCCTCTCTCCATTTCTCCTCCTAG
Seq C2 exon
GGCCCAAACACGTCTGGGTATCTGGTTGGTAGGAACAATGCAAATGGGGTGGACCTGAACCGAAACTTCCCGGATCTCAACACCTATTTCTACTACAATTCGAAGTATGGCGGCCCCAACCACCACCTGCCCCTCCCTGACAACTGGAAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013439:ENSRNOT00000018221:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(21.7=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]