BtaINT0043636 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5280473-5280917:+
Coord C1 exon
chr16:5280473-5280563
Coord A exon
chr16:5280564-5280840
Coord C2 exon
chr16:5280841-5280917
Length
277 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TCTTGACTCTTTGTCCCTAGGTA
3' ss Score
11.23
Exon sequences
Seq C1 exon
TGGCAGAATGTGAACCTGTCGGAAAGCAAGTCTTTAAAAAACCCAAGAACCAATTTATTAGACCAGATGTTAACTCTTCTTGTGATGAAGG
Seq A exon
GTAAGTGAGGACTATCTCAGACTACAGTAGGTACACTGCAAGCCCTGTGTTAAGAGTTTATCTCAAAGACCTTCTTCATGGGTTTGTGGACATGTTGATCACTCTGTTTTTCCATTAATGGAGACTATGCTGTTCAGTGGATGGGTTGTGCTCCTGGTGGCTACATTTTTGTTCCTATAGTTGCCTGTCCTGAAAGTAATATGTGCTATTGAGCCAATAGCTTTTGCTTAGGCTAATGGTCCACAGATAACAAAATGTCTTGACTCTTTGTCCCTAG
Seq C2 exon
GTACCGACTGGGTGAAAGTGTCTATCAGCAGTGTCAAGGCACAATTCCTTGGTTTATGGAAATTCGTCTTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496:ENSBTAT00000063039:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAATGTGAACCTGTCG
R:
ACAAAGACGAATTTCCATAAACCA
Band lengths:
164-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development