HsaINT0041178 @ hg19
Intron Retention
Gene
ENSG00000117322 | CR2
Description
complement component (3d/Epstein Barr virus) receptor 2 [Source:HGNC Symbol;Acc:2336]
Coordinates
chr1:207644342-207644844:+
Coord C1 exon
chr1:207644342-207644432
Coord A exon
chr1:207644433-207644767
Coord C2 exon
chr1:207644768-207644844
Length
335 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ATACGTGACTCTGTCTCTAGGTA
3' ss Score
9.45
Exon sequences
Seq C1 exon
TGGCAGCGTGTGAAGCTACAGGAAGGCAACTCTTGACAAAACCCCAGCACCAATTTGTTAGACCAGATGTCAACTCTTCTTGTGGTGAAGG
Seq A exon
GTGAGTGAAGGCTGACTTAGTCTGACCCAATTCCGGTGTATCAGCACACACTGCAGGCTCTATGTAAGAGTTTGTATCAGTACACCCTGCAAGCTCTATGTAAGAGTTTGTCTCATAGGTGCTTGCCTGTCACATGGTCATGGAAGTGTCTATCATACTATTTTTCCATGCATGGAAATTATGCCTGTGCAATGAGAAGTTGGTGCTGATGTTGGCTACATTTTTGTTGCTATTGCTTCTTGGCCTGAAAGTAGTGAGTCTGCTTGGGAGCCATGGCTCTTGCCTAACTTAATGGTCACCTGATGGCAAAATGACATACGTGACTCTGTCTCTAG
Seq C2 exon
GTACAAGTTAAGTGGGAGTGTTTATCAGGAGTGTCAAGGCACAATTCCTTGGTTTATGGAGATTCGTCTTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117322-CR2:NM_001877:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)