GgaINT0141332 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2491077-2491535:+
Coord C1 exon
chr26:2491077-2491176
Coord A exon
chr26:2491177-2491448
Coord C2 exon
chr26:2491449-2491535
Length
272 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ATTCCCTCTGTGTAACTCCAGGT
3' ss Score
-10.08
Exon sequences
Seq C1 exon
GGAAAGAATGTAATTATCCAGAAGCACCACAGAATGGCAGAGTTGTTGTTCTGACAGATCTCCTGTTCAGGTCCATCGTGAACTACACATGTGAAGAAGG
Seq A exon
GTGAGTCACACACTCCCTCTGCTGATCCATTTACTGAGCTCATGTTGGGCAATTTAAAGCGAGGGGGTACAGCACGCTGCTCAGCTCATGCCAGTAAGCCAGGATTGGTACTTCTGGCCCAGGAAGAAGGAACTCGGTGCTTTTCATCCCCACGTATCCCATCAAGAGAATTATCCAGAAGCAAGCGACTGTTCTGGAAATGCTGGGGTAGTGCAAAGCCCAGGGTGCACACCTTGCTATCTATCAGCTGCTATTCCCTCTGTGTAACTCCA
Seq C2 exon
GGTACCGGCTGGTTGGACAGTCCCTGAGGCGCTGCGAGCTTTCTGGAGCAGATATTGCATGGAGTGGTGATGCTCCCACCTGTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTAATTATCCAGAAGCACCACAGA
R:
TCTGACAGGTGGGAGCATCAC
Band lengths:
180-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]