MmuINT0041982 @ mm9
Intron Retention
Gene
ENSMUSG00000026616 | Cr2
Description
complement receptor 2 [Source:MGI Symbol;Acc:MGI:88489]
Coordinates
chr1:196984254-196984696:-
Coord C1 exon
chr1:196984606-196984696
Coord A exon
chr1:196984331-196984605
Coord C2 exon
chr1:196984254-196984330
Length
275 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
ATATGGCTCTTTGTCTCCAGGTT
3' ss Score
9.34
Exon sequences
Seq C1 exon
TTGCAGAGTGTAAGCCAGTAGGACCACATCTCTTTAAGAGGCCTCAGAATCAGTTTATTAGGACAGCTGTTAATTCTTCTTGTGATGAAGG
Seq A exon
GTGAGTGAAACATGTCTCATTCTGAATGATGTCTGTCCCATCAGTACGCACTGTAAACTGTATAAGAGTTCATTTAAAAGGTCTTCCCCCTGCCATATGTTCACAATATTTTTCTATGCATGAGGACTATGCAGTTAATGGATGGTGCTGAGGTTGGCTATATTTTATTCTTGTTGTGTTTTGTCCTAAAATTTGTTAGTCTGCCTCTAGATCCCATAATGCTTGCTTAGTTTATTGTAATCATGTGGTCAAATGATATGGCTCTTTGTCTCCAG
Seq C2 exon
GTTCCAGTTAAGTGAGAGTGCTTATCAACTGTGTCAAGGTACAATTCCTTGGTTTATAGAAATCCGTCTTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026616-Cr2:NM_007758:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(51.9=87.1)
A:
NA
C2:
PF0008415=Sushi=PD(46.2=88.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGAGTGTAAGCCAGTAGG
R:
ACAAAGACGGATTTCTATAAACCAA
Band lengths:
164-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: