BtaINT0044256 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70252125-70253993:+
Coord C1 exon
chr3:70252125-70252248
Coord A exon
chr3:70252249-70253840
Coord C2 exon
chr3:70253841-70253993
Length
1592 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAA
5' ss Score
1.62
3' ss Seq
GAAGTACATTGTCATTGCAGGTT
3' ss Score
4.96
Exon sequences
Seq C1 exon
TATCTAGATCACCATGGCAACTGGACAGAAGTTGATGAGAGCTATTAGAGTTTTTGAATTTGGTGGACCAGAAGTGCTGAAACTCCAGTCGGATGTTGCTGTACCAATTCCGAAAGACCATCAG
Seq A exon
GTGGAAATCATTACTTATAAACAGGCAATAATTATACTGAGTGTATGTCTCTAGCACATGAAGTTATTGTTCGAAAGAATGATTTATAAAGACATTGCTTTAAGACGGACCCTGGAAAAGGGAATGGCAAAACACTCCAGTATTCTTACCTGGATAATCCCATGAACAGAGGAGTCTGGTGGGCTACAGTCCACAAGGTCACAAAGAGTCAGATACGGCTGAGCTACCTTCACTTCTGTTTACACCTTAAGCTCCGACAAAGAGAACATATAATTCTAACTAGTGAAGTAAATGTATAAAAAGAATGAAGTTGAAAATCATCTGTGTAGTGAAGTAATTGGATTTTTCTGAATGGAGTCATGATTATTCAATTACAGTCTTTCATGATCTTTGTTTTATGCATGGGGAGAATAATTTTCTTCTGCATACATGCTTTTTCACATACAAGAGATTTTAAATATAGATTTTAATAATTTCCAGTGACTTTAACAATATACTTTTTCAATAAAAATTGTATATTTTTATTACTGCACCTACCATCACTCCCATGTCTAACTTCCTTAGCAAGCCTTATGAGAGTTTTTACAGTTTGGTTATGATTTGGCAAAGATTTATTTCTTATCATTTCTTCTCAGTAGACTGCTGTGACAATACAAGCTTTGTCTGGTTTCCCCAAGAGGTCCTTTCATTCCTTCTGTCTTTGCACATACTGTTCCTTTAACCTGAAATATACTTCTTCCATTCTGAAAGATATCTACTAATCCTTTAAGATCTAGATCAAATACCACTTCCTTCATAAGGCCTCTCCTTACTTTGATAGCAGAAGTAATCATTCTGTATTAAGGTCCGATGAGCTTCTATAATAGATGTAGCCTCAAAATTTCAATGGTTGGCAGCCTGGATGGGAGGGGAGTTGAGGGAAGAATGGATACGTGTATACGTATGACTGAATCCCTTTGCTGTTCACCTGAAACTATCACAACATTGTTAATTGACTATACCCCAATATAAAATAACAAGTTTAAAAAAAAAAATCTCAGTGGTTCTCATTCACTAAATTCCACAATTCTAAAATGTCAGTGGATCGAGTTCTTTCCAAAGTGATTAGGGACCTGTGCTTCTTCCCTTGTGTGGCTCTGCCACCTTCAACACCTGTCTTCTGAGGTCACTAAGAAAGGGTGGAAACACTATGTACATTGCCTAGGAAGGACTCTGTGGGTCAGTCCCGAAAGTAGCTTTCGTCACTTATGTTTACATTCCATTTGACTGCTTATAACTCTGAAGAAACCAGGAAGGAATATTCTTCCTACCTTGCTGTCCAGGAGGAGAAAATAGGTTTGATAGAGTCTCTGCACACATCCCCTCAGATATCTCCACCACTATTTTCCCCAGATGTTTTTAGTATAGCATGTAGACCATTCTGTCTTACCTTTTTATTTATATGGTGATTTCTAAAACTGGAATGTGAGCTCATTGAAGGCAGGGTTCTCCTCTATTATTGTAGCTCCCATGATCACTCCACTCCAGTCCTATGAAAATGCTGAATGAATGCCTAACTGCTCTGTATGAACTGAAGTACATTGTCATTGCAG
Seq C2 exon
GTTCTCATCAAAGTCCAAGCGTGTGGTGTAAACCCAGTGGACACATACATTCGCTCTGGTACTCACAATATAAAACCACTTCTACCTTATACTCCTGGCTTCGATGTGGCTGGGATAATAGAAGCTGTTGGAGAGAGTGTATCTGCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162:ENSBTAT00000043686:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PU(1.4=5.4)
A:
NA
C2:
PF082407=ADH_N=FE(33.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCACCATGGCAACTGGAC
R:
TGAAAGCAGATACACTCTCTCCA
Band lengths:
270-1862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]