RnoINT0042402 @ rn6
Intron Retention
Gene
ENSRNOG00000028319 | Cryz
Description
crystallin zeta [Source:RGD Symbol;Acc:1311639]
Coordinates
chr2:260891043-260895189:+
Coord C1 exon
chr2:260891043-260891159
Coord A exon
chr2:260891160-260895036
Coord C2 exon
chr2:260895037-260895189
Length
3877 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
3' ss Seq
GACGGGTGTTGTCATTACAGGTC
3' ss Score
7.39
Exon sequences
Seq C1 exon
ATCACCATGGCAACTGGACAGAAGTTGATGAGGGCTATTCGAGTGTTTGAATTTGGTGGACCGGAAGTGCTGAAGCTCCAGTCTGATGTGGTAGTTCCTGCTCCACAGAGCCATCAG
Seq A exon
GTGGATACAATTATTGCAATGGCTGACCAGAGCAGGTGCACAGTGAGCTACAGACACTGAGACAGGGCAGTGTTTACCTGTCTGTGAACCCTGACAAAGTAACACACATGATACTTAGTGAAGGAGACACTTGAAAAGGAACAACTTCTAGCTACCAAGTTCCTGGTGTGGATAATCAGCTCTGTAGCATAATAAGAGTGTCTCAGTGGCGTCATGGGAGTTCTGAGTAAGTTCCCCTCTCAGGAACCTCCTGGTTTTTACTTTTCACAGGGTAGGAAAGTGATTTCCCCTCTGCACTATTGCCTTGCCAGATTACACTGAAGGGAATTCAGCTGTGGAATTTAATTGCCTCTAGTGATTTTAATCAATGTCTTTTGACTCAAGTTGTATACACTTACTAAGGCACACTCCATACCCCCAGTCTAATATCCTTCTCAAGCCTCATAAGAATTTTTTCTTCATTTCCTTCATATCTCATCTTTCCAGGTTCATTTCTTATCACCCTCCCAGTAGATTTTAACAATCTTAAGTTATCCAGTTTCCCCAAGAGACCCCCATTCCATCTATGTACATATTTCTTTTACCTAAAAATAGCCCCGACCAGCTCCCCATTGAGCAGGAACTCAAATGGAACAGGAACCAGAAGACAGGAGCTGAGGCAGAGGTGGGGGAGGGGTGCTGCTCACTGGCTTGCTCCTCACTGCTTGCCCAGCCTGCTTTCTTATAGCACCCAGGACCAACCACCAGTCTAGGGTGACCCACAGTGGGCTGGGTCCTCACACTTCAATCACTAACTAAGGCCTGCCTCTGAGTCCTATCTTCTTTGTACATTTTCTCAATTGAGGTCCCCTCCTCTCAGATGACTATAGCTTGCGTCAAGTTGATCAAGGATTAGCCAGCATAACTCAACTTGACACACAGACACCTCATTGTTAAGCCACAGCCTTTCTTGTTCATCCCCAAGATCACAAATTGCTGTCAACATCACATCATAAAATATTTCGCAAACTTAAAAAGTCCTACAGTCTTTAAAAATTCAAATGCTTTAAAATTCAGTCTCTTATTTTTTTTTTACTATGAATAATACTTTTTTCAGTCACTTTCTTTACAACTGAAACTCTGGGAAATCAAAGTTAAACATCCTTGCCCGTGAGTTTCTTGAAAAAGAAAAAGACCAGAAAAACCCCAGAAAAAGTTTTGACCTTGTGCTCCACGTCGTTCTGCTGTGCTGTGTCTAAATGAATTTTTACAAGTCAGCTGCCATCCAGTTTCACAGGGAACCTCTTACTCATAATTTCACTCGGGAAGACCAAGTCATCAAGGATGGCGTCGTGCGCTGCTGTCAGGGTGCGGCTTCTAGGGCGCTTTTGCTTACTTTTCGTTCGGCTTTTCCGGGTTGGCTCGGGCAGAATCCTCCTCTGAGCAGTGAAGGCTACATGCTTCCCACTGAACTCTTTCTCCAGTTCATGAACCAGCCGGACTTGGGTTTTCCGGAAAGATTTCAGCTGAGGAACTGACGGAAGCTTTCCGACCACCACCGGCTTCCATTCCCTCTGCCACAGTGGCTGAGTTCCCGCAGCTGCGCCTTGAGATCCGAGTTCATCTCCAGCTCCAGCAGCGCCTGAGAGAAGCCAGACTCCAACTTGTCCGACTTCGCGCCATCGGGTTTCACAACCTTGGTGCTTAAGCTGAACAGGCTTTGTCCTTACAGGGTGCTGGCTTAGCTTTTTTCTTTTTCTTTTTTTAAAAGATTTATTTTATTTTATTTTATTTTATTCATGTGAGTACACTGTAGCTGTCTTCAGACACACCGGAAGAGGGCATCGGGTACCATTACAGGTGGTTGTGAGCCACCGTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTAACCACTGAGCCATCTCTCCAGCCCCAGTCTCTTTAAAAAAATCCAAAGTCTATGTAAAACTTAAAAACCTTAAAAACTTCAAAAAGAAAAAAAAAAAAAGGAACATATTTGGGTTTATCCCCAGGAGTGGTATAGCTGGATCTTCAGGGAGAACTCTTTCAAACTTTCTGAGGAACTACCAGAATGAATTCCAAAATGGATGAGCCCTTCCAGGCAAGGCCAAAGGGGCAACATTTTTCAGGATTTGATCCTGTTATTGATATGCTGTTCCTGTTATTATTAGTTAAATTAATATATAATCCCCGGGCATTAGCCCACTCCTTTGGGCAGATTTTTGCAGATCATCGTCATGCTATACAGACAAAGAGATGGTTTCTTAATTCCTATGAGTCTATAAGAATTCCTAAAATTATACTAGTAATTAATAAACCATTTATAATAGGGCTGCTATTGGATCCTCTCTAATATTCAAACTGCCATGAGGACTCTGCCAGTCTTCAAGCTAATTGCTTCTGAGATAGAAAGCAGGCATTTACAACTTAGAGCACATTCCAAGAGGTTTTGAAATAATAGGAACTAATAGGGAACTAACATAAAAGGGAACTAATGATTTATTGTAAGAACAAGAACAAAAGATAAAAATATTGACTGCATTTATCTATACAAAACCTCAACGCTAACTTAGACACAAAAATTATAGTTTTAGAGTCTCAATGAGCCTGTGGAACTGGGGACAGTAATGGATGTCTAGCTGGATAACTAGTCTTAATGGAAACACATGTAAACTCTCTTGTAAACTTCATATTCAATTTATGATTTGAATTCATGTTTGAACTTTTATAAAAGGGTAGGGGTGGGGAATGTTTGGGAAAACCATGTGCTCTGTTTTCCTAGAAAAGGTACAAAAGACTAGGACCTTAAGCGCAGGAGAGAGCAAGATCAAGGGGAAGGCGGCGGCAGCAGAGAAACTCAGACAGTAACAGAGCATAAAGTCTGACCGGATTTTCCTCATTTTACTTTCCCTTAGAAATCAGGATTAGAATCATTTTTAAAAGTTTCTCCCTTTTTACTTCCTCCAAGAGCAACTTTCTCCAGCTGACAAGGGGTTAAATAAACTCTCAGAGGACCTGTGGAGAAAAGAACAAAGGAACGATTTATTTCAGGCCCTGCTGTTAAGCAATAGGTGTCAATAGACCCAGAGCCTGCAGCTTCTGGCCTCAGAGCAACCTAAAGTCAAGCTGGGTAAAGGCTACACTAGAAAGCAATCTCAATCCCTCCCAAGACTTAGCCTTGTCCCTGCTTATGCTCTTTCCCCTCTGCTACCTTCAAGAGAGAACCGGAGCTCCAGAACTGGTTGGTCTCTGGCGGGAGGAAAATGTTTGTTTCACTCACAGTTCATCCTCTAAAACAGTCAGAACAGGGACTCATAGTTCAGAAACCTCGGTCAAGAGCTGATGCAGAAGCCATGGAGGAGTGCTGCCCACTGGCTTGCTCTTTCTGGCTTGTTCAACCTGCTTTTTTATAGAACCAAGGACCACCTGCCCAGGGGTGGCACCACCCACAATGGACTGGGCCGCTGGGCCACCGTGCATCACTATTTAAGAACCCCCCCATACAGACTTTCCTGCAGCCTGAAGCAACTTCTAAGTTCTTTGCTTTCGGGTGGCTGCAGTGCAAGCCAAGTCGATGTAAAAGCTACCAGGGAATAAAGGTCCTCCCACTTACCTCAGAAGAAGAGGAAGTGGCTGATGAACACACCTCTTTATATGTATAGTTTTCCCGAAGTTTTGAATGTAGCGTGCGAGCTAGTCTACCTCACTTCCTGCTGCAGACTTAGAATACAGGGCAGGGGCTGGCTTGGACTTTCTTTACTGTCTTGGTTTCTCCGGCTCCATCGTTTTCCACACAGCACCACTGTAAGGTAATGCCTCAGTTACCTGGACAAACTGACGGGTGTTGTCATTACAG
Seq C2 exon
GTCCTAATCAAAGTCCATGCCTGCGGCGTCAACCCCGTAGAGACATACATTCGCTCCGGGACCTACAGTCGGAAGCCTGCCTTACCCTACACTCCAGGCAGCGATGTGGCTGGGATCATAGAATCTGTTGGAGATGGTGTGTCTGCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028319:ENSRNOT00000032808:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PU(1.9=5.4)
A:
NA
C2:
PF082407=ADH_N=FE(47.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]