GgaINT0035727 @ galGal4
Intron Retention
Gene
ENSGALG00000011361 | CRYZ
Description
quinone oxidoreductase [Source:RefSeq peptide;Acc:NP_001073231]
Coordinates
chr8:28537964-28538559:-
Coord C1 exon
chr8:28538442-28538559
Coord A exon
chr8:28538117-28538441
Coord C2 exon
chr8:28537964-28538116
Length
325 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACGAATGTAATTCTTTTCAGGTG
3' ss Score
8.75
Exon sequences
Seq C1 exon
GATGGCCGCGGCAGCCGCAAGGGGTGCGATGAGGGCGGTCCGGGTGTTTGAGTTCGGGGGCCCCGAGGTGCTGAGGCTGCAGGCAGATGTCCCCATCCCCTCTCCGGAGGACGCTCAG
Seq A exon
GTGGGTGAGCTCAGCCCCAGCAGCCCCGTGAGCACCGACACACGCGGAGCAGCTCCTCCCCGCCCGGCTCAGGCGCTGCTGTCAGCCCGCTCGCACGCCCAGGACGCCGCGGTAGGCTGCTGTGTCGGTTCTTGTGCCGTTACGTTTGCTACGCATTGCACGAAGAGGATTCCCTGGCAGGACTGGAGTTGAGCGCCGGCCAGTTTACCTCGGAGCTTCAGCTCGGCGCTGCTTTGTCGCCCAGCTGAAACGCTTTGATGCTGTGCTTCGAACTCTAACTTTTAAGCCTTTTAAAATGCTATTTAACGAATGTAATTCTTTTCAG
Seq C2 exon
GTGTTGATTAAGGTCCACGCCTGCGGGGTAAACCCTGTGGAGACCTACATCCGTTCTGGGAACTACGCGAGAAAACCGGCCTTGCCTTACACGCCCGGCTCCGACGTGGCTGGTGTGATTGAGGGTGTTGGGGGACGCGTGACTGCATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361:ENSGALT00000018533:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PU(2.1=5.1)
A:
NA
C2:
PF082407=ADH_N=FE(52.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGGTGCGATGAGG
R:
CTTGAATGCAGTCACGCGTCC
Band lengths:
255-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]