GgaINT0035727 @ galGal3
Intron Retention
Gene
ENSGALG00000011361 | CRYZ
Description
NA
Coordinates
chr8:30439620-30440835:-
Coord C1 exon
chr8:30440718-30440835
Coord A exon
chr8:30439773-30440717
Coord C2 exon
chr8:30439620-30439772
Length
945 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACGAATGTAATTCTTTTCAGGTG
3' ss Score
8.75
Exon sequences
Seq C1 exon
GATGGCCGCGGCAGCCGCAAGGGGTGCGATGAGGGCGGTCCGGGTGTTTGAGTTCGGGGGCCCCGAGGTGCTGAGGCTGCAGGCAGATGTCCCCATCCCCTCTCCGGAGGACGCTCAG
Seq A exon
GTGGGTGAGCTCAGCCCCAGCAGCCCCGTGAGCACCGACACACGCGGAGCAGCTCCTCCCCGCCCGGCTCAGGCGCTGCTGTCAGCCCGCTCGCACGCCCAGGACGCCGCGGTAGGCTGCTGTGTCGGTTCTTGTGCCGTTACGTTTGCTACGCATTGCACGAAGAGGATTCCCTGGCAGGACTGGAGTTGAGCGCCGGCCAGTTTACCTCGGAGCTCAGCTCGGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCCCAGCTGAAACGCTTTGATGCTGTGCTTCGAACTCTAACTTTTAAGCCTTTTAAAATGCTATTTAACGAATGTAATTCTTTTCAG
Seq C2 exon
GTGTTGATTAAGGTCCACGCCTGCGGGGTAAACCCTGTGGAGACCTACATCCGTTCTGGGAACTACGCGAGAAAACCGGCCTTGCCTTACACGCCCGGCTCCGACGTGGCTGGTGTGATTGAGGGTGTTGGGGGACGCGTGACTGCATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361:ENSGALT00000018533:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PU(2.1=5.1)
A:
NA
C2:
PF082407=ADH_N=FE(52.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGGGGTGCGATGAGG
R:
CTTGAATGCAGTCACGCGTCC
Band lengths:
255-1200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]