BtaINT0044260 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70269949-70273729:+
Coord C1 exon
chr3:70269949-70270098
Coord A exon
chr3:70270099-70273627
Coord C2 exon
chr3:70273628-70273729
Length
3529 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CATTCTTTTATATTATATAGAAA
3' ss Score
6.07
Exon sequences
Seq C1 exon
GTTGGAATAGCAGCATGCCAAATTGCAAGAGCTTACGGCTTAAAGGTTTTGGGCACAGCTAGTACTGAGGAAGGACAAAAGATTGTTTTGGAAAATGGAGCCCACAAAGTGTTTAATCACAAAGAAGCTGACTATATTGATAAAATTAAG
Seq A exon
GTAAAATTGTTCTATAATTTTATAAAACTAACATTTTGTTTCATGTTCTTTTGTAATTTTTTTTTATCAACTACTCTCTTAAAGTTGTTTGTTTTGCCTATGTGTTTTAAAGCTTTAATTAATTTAAAAGTAGAGATGTCTACTTTTCGAACCTTCACTATCATTTCTGTCTTGTTTATTTTTACTAAATAAAATATAGCCTCTCTCTAGAGGCTTATAGTTATAAAAATCAGTACTCTTTAATGCAAATCACATTTTAAGTAAAGCCACAGCTTTGTATTTGCAGCTGTAAGGCATTTTTTAAACATGTATTTTTATATATTGTGAAATGATCACCACAGTAAATTTAGTTAACATCTGTCCCCATACATAGTTAATAAAATTTTGTTTCTTGTGATGAGAACTTTTAAGATCTATTCTCTTAGCAACTTTCAAACATGTAATAACAGTATTCCTAACTGTAGTCACTGTCCATTACATCCTCATGATTTATTTATTTTACAACTGGAAATTTGTGCCTTTTGATCCCACCTTTATCCATTTCACCCATCCCGCAGCCCTTGCCCCACTTCTGGCATCAAAAAGGTATTCTTAATATAACTTCTATTGGTGTAAATTTTCCATAGAAAGTTGAATTATCCATGGATTACAAACTGGATCTGTCTGGCCTAGGGAATTAAGTTTCTTTGTTTATTGGATGTTTTTGGAGGAGAAACCACTACCTCATCAAAAATAGTGAGGCAGAATTTAGTTGCTGTTACATCTATTCCATTGTTGCAGTGGAATTCAAGCAGGTTCTGGAGTTCTCCATCTTTGCCATAGTAACAATTTACTAAACACTGATTACTTTGCTGACCTCAAACTACTTGCTCATGTTGAGAAAGAATTAGGATATCCCAGGTACTGATGACAGTGTAAACAAGGTCATTACAAACTGAGGGGAAAATGAGTGTGAGTTTGTTTATTACCTCTAAATCATCTTGCCAAAAAACTGAATAAAGGCTGTCCTTTGTATATGTTGAGGAATACAAAATTGGTTGAGCATGCACTCCTGATATCATTATCAAAGATGAAAACTGGCCAGTTATTTTAAGAATAGGTTTTTGTTTTGCAATATAATTCTAAGACCACAAGACCTTATAGCTTCTATCTCTTATACTGTTTCCTTCTGCTTAAGTCTCTCTTTCTCCAAAAACATTCTCTTAACCTTTTCTCCTCCCCTTCCCTCCTTTACCACACATTTCTTGAAAAAGTAGGGAGTACTTAAACTGCTTTTACTTCCTTACCTCCCACTGCAATTTTGCTTCCACCCCAGGGCTTTCCAGGTGGCCCTAGTGGTAAAGAACATGCCTGACAGTGTAGGAGATGTGAGAGATGCAGGTTCGATCCCTGGGTCAGGAACATACCCTCAAGAAGTGCAACCCATCCCAATATTCTTGCCTGGAGAATTCCATGGATGGAGGAGCCTGGTGGGCTACAGACCATGGGGTCACAAAGAGTCGAACACTACTGAAGTGACTTAGCCCGCATGCACACACCAGCTACTTACGGGGCGTGTCAGGGGCACTGATAATCCCCTCACCAGTCAGCTGCTCTTGGCTCAGTTCTCATTGAACTTGACCCTGACCACACCTCCTGGAAGCTGGCTCTCTTCTCACTTCTCTAACTTCACTTTTGGTCTCCCTCCTCTTCATTTCACTTGGTCTTCCATAGGTCTTTCCTCTTGGTCTCTCACTTTCTCTGGTGCTGCACCTTCATCCTGATCCATCTCATACACGTCCTTAGGCTGCTGGTTTCCAGCACTGTCTCTGGCCTGTTTCATTCCTTCACACCATCAGCCTGCTTGACATGGCCATTCATCTGGTCCCTCAGGATAGACACCCACATTTCATTTCCTGTTGTTTAATCACCTTTCTCCCTCCTGCACATCAAATTGGTCACGGTATCTATCAGCTTCATCTCTGACATGCCTTTCATATATGTCTCTGTTTCTTTCCCCTTCACTGTTGTAACTTCATTTAGTCCTCATCTGTTCCAGTCTTGACTCTTACTCACAGCTGAGCTAATGCCCCCTTCTGTCTCCTCTGCTGTCTCCAGAGTTATTTGGTTCTCTGTTTCAAAGAAAGAAAAAGAAAAACATCCTCAGAAATAAACGAGAGCTCCAGAAGAATAGGAATTTCTGTTTTCTTGTTCCTTGCTGTACTTCCAGTGCCTAAAACAGTGCCTGGCACAAGAATTAACTAATGAACATCTGTGTCCACAAAGTCCAAATCTTTTAATGTGGCATTTGATGTATTTTTGTGGTCTGAACCAATGTGTAGTCTCTTATCTCCTACCTCTCCGCTCCCACCCCCGCCCCCATCTCCTTCACAAATGCATACTCCAGCTCTGCTGGGCCACTTTCCAGTTCCAGCTTTTACTCTCCATCCCTACATCTTTGCTCTTCTGTTTCTTTGGTCCAGACTGACTGCCACCTGTCTAGCTTCTCCTTGCCCCTTATTCCTTCTGTTCTTCTTAAGAACTCCTACTTATCCCTCAGGGCCAGGTTGTCATCCCTGTGGAATTACCTTTGACCTTTACAGGTGATCAGAATTGTAACTTTCCCTCTAAAACCTATGGTTTGTTTCCCTGGTGGCTCAGGTGGTAAAGCGTCTCTGCAGTGCAGGAGACTCGGGTTGGACCCGTGGGTTGGGAAGATCCCCTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAACCTGGTAGGCTACAGTCCATGGGGTCGAAAAGAGTCAAACACGACTTCACTTTCACTTTCAATGCAGTACTTAGCCCATCACATCACACCTTTAATTGTAGTGTTTTCCATTTTCCTCTATTTTGGGTTCTCTATGTCCATCTTGACATTCATAATACCTCACACAGTGCTGGGCATAGGTGTTCATTTTTTTCTTAAAATGAAAATGTATAGCTTAGCTTATTTAAGGGCCGGTTTTAGATGTTGGGAATTGACATCAGAAAGCCCAAAAGAAAAGGAGTAGTGTGCCAAGCTGATTGTAGATCACCGAGAACACAACTAAATGCACACACACACAGAATACTGCAATACCAAAAAGTCAGTATTTTTTTTCTTTTGTTGTCTGTTTTTTAATAAAAATGGGAGCACCAATGCAGTTTTTGATTTTTGATTTGTTGCTTCTTCCTCTATTAAAATATATTTTGAAGACAGAACATTTTCACCTAAGGAAGAAGTACTTTATAGTCAAGTTGAGTCGAAACACATGAAAATTTCGGACAAATTTTATTTTATTATAGTAATTTATTTAATACAAATCTGTCATTTTAGATGTGGCTGGTACGTTGGAATTACAGCATCACTGTATAATTAAATTATCTTAGAATTGGCATTATTACTCTTTAAAATATAGCATTTTGTGTCATTTGAAATATATTTCTGTAATATATGGCACTATGATAATCTTTTTTTTTTCTAATCTACTCTGCATTCTTTTATATTATATAG
Seq C2 exon
AAATCTGTTGGTGAAAAAGGAGTTGATGTGATTATTGAAATGTTAGCTAACGTAAATCTTAGTAATGATTTGAATCTTTTGTCACACGGAGGACGAGTAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162:ENSBTAT00000043686:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(14.2=42.0),PF0010721=ADH_zinc_N=FE(38.0=100)
A:
NA
C2:
PF0010721=ADH_zinc_N=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]