MmuINT0042628 @ mm10
Intron Retention
Gene
ENSMUSG00000028199 | Cryz
Description
crystallin, zeta [Source:MGI Symbol;Acc:MGI:88527]
Coordinates
chr3:154618460-154621588:+
Coord C1 exon
chr3:154618460-154618609
Coord A exon
chr3:154618610-154621480
Coord C2 exon
chr3:154621481-154621588
Length
2871 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAC
5' ss Score
7.56
3' ss Seq
CTTGTTCTTTTACCATGCAGATG
3' ss Score
9.57
Exon sequences
Seq C1 exon
GTTGGATTAGCTACATGCCAGATTGCCAGAGCTCATGGCTTAAAGGTTTTGGGCACAGCTGGTTCTGAGGAAGGAAAAAAGCTTGTTCTGCAAAACGGAGCCCACGAAGTGTTTAATCACAAAGAAGCCAACTATATTGATAAAATCAAG
Seq A exon
GTACACTTTTCTACAGTTTAAGGTCAAACTTTGCTTCTGGGAGACTTACTTGGCTTTAAAATAAGTCATTTTAACAACTGCCTTCTTAACGAGTTAACATGATTTTGCTTAGTAAGTAACATTGTTTCTGTTTTCATATCTATATGTTCTCTCACCCCTATAAATGTTTTAATTGATTTAAAAGGACAGGCATCTAGTTGTCCAGATTTTGCTGCCATGCTTGTAATACACTTGCGAATTAAATGAGACGGAGCCTTTCTAAAGTCAACTGAAAGATCACGTTGTAAGTAAAGCTTGCAGCTACAAGATGCTCATAGTGCAGTTGTTAAGGATGTGAAATTCCCATTGCACTCGAGGTTCCCAGAATTACAAACCAGATGTACCTATCCAGGAAAGATGCCGCTTGCTAATGGGGTCCTTGGGTACGGATTATCACTATTCCACCCACCACAGTGAGGCACATTCAGATAATGTTGCTTACCATACAGTTCACACAGGATCTTATCTGTCTGTCTGGTTTGCCTGGCAAGTGCTCAGCCATTGACTTCTGTCCACTGCTCACCTGAATCCTGAAGTCCTTATTTATATATCACTGATAATGGAATCAGCACTTACTCCCTTGCTCATCCTCAAAAGCACTGTCCTAAGGTAGGACAATGAGAATTTTGCAGGCATGGAGTGCCTTAAGGAGGTCATTATCCAAGGAAGAAGAATGTGTGCATGGGGTTATTTCCACCATACCACCTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGCCAGCCAGAGCTCTGACCTGTGCCATGCAGAGAGGAGCTGGCTCCTGGTGCTCAGTGCTGATGTGGTTCTCAGGCGTGTCTGAGCTGAGAGAAGACTGGTTACTGGGGAAAGTTGCTGCTTGTTTCTCCAGCATCTGACTTTAGGCCACGAGGGTGACTCCTTCACTTACCTGCTGGCTTCTGCTTTTTCTTGATCTCAGGAATCTTCCCCACGTCTCTCCACTCCGCTCTCCTCTCCCATCCCCTCATCCCATCTCTTCTTCCCATGCCTAACTTCTAGAAACAGCAGGCTTCACTGCTCCCTTGCCCCCTCTCTCCCTGTGCAGTTCTGCCTGTGTGTACTCTGACATTCACAGTGGCTGCGTCTCTGGTGAGTGGAGAGCTCTTGTGTCCAGGCTGCTCTGTGTCTGTCCTTATCCTAAGGAGCATGAGATCTTGATTGGCTCTCTTGAAACTCTCTGTCTCCCTGCTCACTGGCTTCACTAGTAACCTCCTCTTCTTCACATTATTATACGTTGTGTATCTTTGTGTCTGTGTGTATGTATGCCCTTTGTTGGCTCCATCGCCTGAATTCCATCTCTGTGTCACTAGCCTAGTAGTCCTTGGTACTCACCTGTTACCCTGACAAGAACCCTTATATCATTGTCTATGGCTGTTTTCAAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGCATGTGCACTTATGCATGGATGTGTAGAGGGCAAGGGTTCACCTTGATGTCATCCTTTGTCACCCTCCATCTTTTTTCTGAGACAAGGCCTCTCAGTGAACCTGGAACTCACTCCTCCCTGTAGACTGCCTGGCTAGCAGGACCAGATCTCTGCATCTCTGCCCCCAGCTCTGGGATTCCAGCTTCCTCTGTGGTGCTGGATCTGGAGAAGCCTGTGAGCGGGCACTTTACCCTGTGCTGTCTCCGCGTGAGCTTTGCTTATGCCCATTTAAATCAGCTTCTCCTGGCTGCCCTCCAGTCACCCACCCCCATTGCTCTGCCAGTTTCACCCCTTGACAAGGATCTCTCAAGTTCCTGTCCTCTGTTATTTAAGCCTCCGTTCCCTCTGACCTGATGAGTGTTACTGAGCTCAGAGTTGCTCTGTCCACTCTGTTCCTAGAGATACCTGTCCCTTTAAATATTTGTACCAAGAAATAACTGAAATGGAGCTCTGTTCAAAGAGGAATTTTAACTTTCCTGTCTGTTGTTGAGCTTCTAGTACCTAAAACACTGAATTAATGAACACCTGAAAAATAAAACCAAACCAAAACCCAAATACGGAGTTCTTTACCTAACATGTTGTTCTGCATGTTTTGCAGCCTGTAACAGTTTGCATTTTCCTCTTCCTCAATGCTGCGGTGTGAGGAAGCATTCCCCACCTCTCCCACAATGCTGCGGTGTGAGGAAGCATTCCCCAAAGGCCCTTGTGTGTCATTTTTCCTTCATTTTCCTACATCAATTACAGTGCCAGGCTTAAGTACTCATTACTTAGAATGTTATATAAACCTAATGCAAAATAATTATAACATTGCTGGATCTTTAAGAACCAGTTTAAAATGTAGAGAACCAACCCAACAGTGCAGGCAGAAAGGATCAGTATATCAAGCAAATGATAAACCACTTATAACACAACTTGATATGCACACAGGCAGAAATACACACCACACCCACCCACAAATACACATCCACAACCCCCAACCCCCACACAGGTACCCATCCGTACACCACAGATATCCACTCATAGACATGCTCGAGCACACACACACACACACACATGCACATGCACATGCACACCACACACACACACACGCACATGCACACACCACACACATGCACATGCACACACCACACACACACGCGCACACGCGCACACACACACACACTAATCCATACAAATTTGACCTGACCATGGTATCGCACCCAATGTTTCTGAGTTGGTACAGTAGAGAGTGTGACTGGTCACTTTGTAATTAGATTATTTTAAAACATGCACTGTTGGTTCTGATGCGTGCTTAGAGAAGTGGTTTTACCGACTCTCGCCTCCATCTTGTTCTTTTACCATGCAG
Seq C2 exon
ATGTCTGTTGGTGACAAGGACAAGGGGGTTGATGTGATTATTGAGATGCTGGCGAATGAGAACCTTAGCAATGACCTGAAGCTTCTGTCCCACGGAGGACGGGTCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028199:ENSMUST00000029850:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(31.0=25.5),PF0010721=ADH_zinc_N=PU(37.7=96.1)
A:
NA
C2:
PF0010721=ADH_zinc_N=FE(26.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types