GgaINT0035731 @ galGal4
Intron Retention
Gene
ENSGALG00000011361 | CRYZ
Description
quinone oxidoreductase [Source:RefSeq peptide;Acc:NP_001073231]
Coordinates
chr8:28534754-28535309:-
Coord C1 exon
chr8:28535160-28535309
Coord A exon
chr8:28534856-28535159
Coord C2 exon
chr8:28534754-28534855
Length
304 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
ATGTATTTTATTCTGGGTAGGAA
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTGGGAATAGCAGCATGTCAGATTGCCAGAGCTTATGGCTTGAAGGTTTTGGGCACAGCGGGAACCGAGCAGGGTATGAACGTTGTTCTGAGAAATGGTGCTCACCAAGCATTTAATCACAGAGAAGCTAACTATCTTGACAAAATTATG
Seq A exon
GTAAGTACATACTGGTTCTAGCTCATGCAGCATCTCTCTATTAACTTTAAAAAAAAGAATTGTGAACACTTGTTTGTGGAAACTTTTAAAAACAAATCTATGCAGTGGCATTTCAGAAAGTCCCAGTCTGATGGTTCTGCTGCTTCAACATCTCTACATTTGCTATTGGCCATCAGCCATAGTACAAAGTCTGTATGTAAAAAGCAATCAACTGCCAAAGGTGTGCTTTCAGTAGTATGTGAAATGTCCAGCAGCACCAAAACACTAAGTGAAGTGACTTTATAATGTATTTTATTCTGGGTAG
Seq C2 exon
GAATATACCAAGATGCAAGGAGTTAATATAATAATAGAAATGCTCTCCAATGTCAATCTGGCTGCTGACCTGCATCTGCTGTCCCATGCAGGAAGGGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011361:ENSGALT00000018533:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0010721=ADH_zinc_N=FE(38.0=100)
A:
NA
C2:
PF0010721=ADH_zinc_N=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAATAGCAGCATGTCAGA
R:
ATCACCCTTCCTGCATGGGA
Band lengths:
251-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]