HsaINT0041858 @ hg19
Intron Retention
Gene
ENSG00000116791 | CRYZ
Description
crystallin, zeta (quinone reductase) [Source:HGNC Symbol;Acc:2419]
Coordinates
chr1:75172787-75175931:-
Coord C1 exon
chr1:75175782-75175931
Coord A exon
chr1:75172889-75175781
Coord C2 exon
chr1:75172787-75172888
Length
2893 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
ATTTCTCTTTTATTATATAGAAG
3' ss Score
6.45
Exon sequences
Seq C1 exon
GTTGGATTAGCAGCATGCCAAATTGCTAGAGCTTATGGCTTAAAGATTTTGGGCACTGCTGGTACTGAGGAAGGACAAAAGATTGTTTTGCAAAATGGAGCCCATGAAGTGTTCAATCACAGAGAAGTGAATTACATTGATAAAATTAAG
Seq A exon
GTAAAATTTTCCACTGTTTTACAAAAGTCAAACTTTGTTCCTTGGAGACTTGCGTGGTTTTTTAATATGTTTTTAACCAACTACTCCTTTAAAGCTGTTTGCTTCCTTTTTTCAGTGCGATGAATTTTTATGCGTGTTTTAAAACTTTATTTAAAAAACAGATGTCTAAGTTTTAAACTTTTACTATCATTTTTGTATTGTTTATGTGTATTAAATAGAATATAGCTTCTCTAGAATCTTATAGCTATAAAAATTGATTTTTTAATGCAAATAACATTCTAAGTAAAGCTGCAGCTTTGTATTTGCAGCTGTGAGGTATTCTTAATATAATTTCTACTGATGTGAATTCTCCATGGAAGGTGAGATATCTGTAAATTACAAACTGGATCTGTGTGGCCCAGGGAATAAAGTTCATTTGTTAGCTGGATGCTTTGGAGGAATAATCACTACTGCATCCAAAATGGTGAGGTGGCATTTATTTAGTTGCTGCATTTAACAGAATTCAAGCAGATTCTGAAGTTCTTCACTTGTACTATATTAGCAATTTGCTAAACACTTATTGCTTTGCTAATCCTCAACCACTTCCTCACGTTAGGGAGATTAGAATTTCCCAAATATTGAGTACTGTGTAAATTAGATCATTACAAATGAAGGAAAAAATAAGAGTGAGAGTTTATTACCTTTTTTGCAATCATCTTGCCAAAAAGCCGAACAAAAGCACTCCTTTGTTATACGTCTGGGGAACCTAAGATCTAGCACTGCTGATACCATTATCCAAGAATATTCACAAAGATGAAAAATGGCCCGTTATTTTAAGAGTATGGTTTTTGTTCAGCAATAATCTAATTTTAAGACCATGAGGTCTTGGGAGCTTCCACTGACTCCTTCTGCTTAAGTCTCTCCCATTCTCAAAAACATTCTCTTAACCTTTATCTTACTCCCCTTTCTCTTCTCCTCTTTCCCACAAAACTTCTTGAAAAAGTAGTATTTATTGCTTTTACTTCCTTACCTTCCACCACTTCTCACTGCAGTTTTGCTTATAGCCCAAGTATTTATACTGCTTCCCAGAGGTCACTGAGAAGCTCCTAATTAACAGTCTGCTGGTCTTCTTTCAGTCTTCATCTTGTTTGATTTTTCAGGAGCATATGACCCTGACCACATTTCTTTGAAACAGGTTCTCTTCTTACTTTCCTGACTTTTCACTTTCAATCTCCGCCCTCTTCATATTATTTAATATTAATATTCCTTAGGTTGTTTTTGCTTGGTCTCTCATCTTCCCTGGTGCTAGACTTTCATCCTGATCAGTCTCATATACTCTTGTGGCTCCCTTACTACCCATATACTGTTGATTTCCAAAACTGTCTTTGGCCTGAGTTCACTTCCTTCATGCCATCAACCCGCTAGACATTGCTACTCATCTGGTCGCCCAAGACAGAAACCCTCATTTTGTTTGTTTTTCCTGTCTTTTAATTATCATTCTCCCTCCCACCCAGCAAGTTGGTTACCTCATTTTATCAGTTTCATCTCTGACATGCCTTTCAAATGTATTTCCTTATCTCTATTCCACTGACCACCATAACTTAGTTTAGGCCTCAGTTTCTCCAGCCTTGACTGTTATTCATAACTGAGCTAATACACCCTTTTATCTATGCTGTCATCTCCCTCTTAAAAAAGATCTCCAGAAATAAATAAAATGGAAGCTTTATGAGGAGAGGAGTTTTGTCTCTCTGTTCCCTACTGCACTTGCACATGCAGTAATAAACCCCTGTAATAAAAAAACAAAACAAAACAACTACAAAAAAAACCCCACACAATCCAAATCCTTTAATATGGCATTCACTGTGTTTTCACTATCTGTCCCAACTTACAGTCTCCTCTCTCCTACCTCTTCCTCTCCTTGCCACTCCCCCTTACCTGATTATGTACTTCAGTTCCTCTTGTATTTCAATCCTTGTGTTCTCAGTCCCCTCCATCTTTGCTTTTCTGTTTCTTTGGTCCAGACTGACTCAGCCTCAGGTCTAGCTTCCCCTTACTCATTTTCCTTTCTTTTGGCTTGGGAAACTCCTATTCATCCCTGAGGGCCCAGTTCATCGTCTCTGTGGAACTTTATCTGACCATGGCAGGCAATCAAACCTTAACCTTTTTTCTCTGTATTCTATGATTTATTTCTGCTAATGTGTTACTTAGCCCATTACTTTATAGCTATGACTGTAGTATTTCCCATCTTTCTCACTAGTTTTGTTTTGAGCTCCCTATGTTTGTATTTGTATTCCTGGTACCTAGTGCAATCCCGGGCACAGGGATTCATTTGTGTGTGTGTGTTAAAATAAAATGAATATAATGTAGATGTGTGTAGCTTTTTGTAAGAGCCAGCGTCCAACATCCAAGAGCCCAAAAGAGTTAGTGCATCAAACAGATGATAAACCATTTAGAACAAAACCAAATGCACTAAAACAACAAAAATCATGCAAAACCGAACAGCTAATGATATCTTCTTTTGCTTTTTGTTTATTAATAAAAATGGGAGCCCCCTGGGGGTTTGGGGCTTTTGATTTATTGTTTCTTTATGAAAGTTTATTTTACAGATAGAAAATTTTCAGCTAAGTATTTTATACTCAAGTTGAGTCTAGCACCTGAAAATTCCAGACAAACTTTATTTCACTACAGCAATGTATTTAGTACAAATTTTTATCAGTTTAGATGTTCTGGCTGGTACCTTGGAATTACATCGTGATTATATAATTAGATTATTTAAAATTTTGCATTATTAGTCTCAAAGATGTAGCATTTATATATCATTTGAAACATATTTCTATAATATCTTGTACAGATAGTAGCTATTTTACAGTTTTTCACTTGCTATCTTACTCTACATTTCTCTTTTATTATATAG
Seq C2 exon
AAGTATGTTGGTGAGAAAGGAATTGATATAATTATTGAAATGTTAGCTAATGTAAATCTTAGTAAAGACTTGAGTCTTCTGTCACATGGAGGACGAGTGATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116791-CRYZ:NM_001130042:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF122423=Eno-Rase_NADH_b=PD(47.2=50.0),PF136021=ADH_zinc_N_2=FE(33.3=100)
A:
NA
C2:
PF0010721=ADH_zinc_N=FE(25.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)