BtaINT0044803 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003845 | CSRNP1
Description
cysteine-serine-rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
Coordinates
chr22:12521621-12522680:-
Coord C1 exon
chr22:12522421-12522680
Coord A exon
chr22:12521936-12522420
Coord C2 exon
chr22:12521621-12521935
Length
485 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TCCTCATTCCCTGGACACAGCTT
3' ss Score
5.02
Exon sequences
Seq C1 exon
CCCTGTCCATTCTGAAGCGGGCTCCCCGGAAGCGCCGAGGCCGAGTAGCCTTTGATGGCATCACCGTCTTCTACTTCCCGCGGTGCCAGGGCTTCACCAGCGTGCCCAGCCGTGGCGGCTGCACCCTGGGAATGGCCTCCCGCCACAGTGCCTGCCGCCGCTTCTCCCTGGCTGAGTTTACCCAGGAGCAAGCCCGGGCACGGCAAGAGAAGCTGCGCCTACGCTTGAAGGAGGAGAAGCTGGAGGCGCTGAGATGGAAG
Seq A exon
GTGGGGAGACCCTCTCCGTGGCCTTTGCCCTCGGGCTGCTCTAAAGTCCTAGCCTTGGGGGGGATAAGGGTCATGGTGGTTGCCATATTGCTTCTTCTGTATTTGGGAGGCCCATGGGGCTGACTGATTTGATGAGAGTCTGCTGCAGATTTTCTCTAGGCAGATGGGTATAGAAGGGCTCCTATTGCAGGGCCAGTGGGCGTGGTACCTCAATCTGCCTGACCTTACTGGGGAGGGGGAGTAGATGGGCCATAGGGGCGTCAGTGTATCTGTGTGTCTCGGGGAAGGGGTTTGTCCATGAAGTGGGGAATAAGGCAAATAGGAACCGTCTTTCTGAATGCCCTGAGGGCGTGTTCTTGGCTGTCCCATTCACTACGGCATCCACAATGCCCAGCCCAGAATAAATACTCGGGGGCATTTATTAAGTGACCGAAGCTCTGGGGTCATGTCAGCCTCTCATGTCCCTCCTCATTCCCTGGACACAG
Seq C2 exon
CTTTCGGAGACTGGGGTGCCCAAGACGGAGGCCGGCCTGCCGCTCACTGTGGACGCCATCGATGACGCCTCTGTGGAGGAGGACTTGGCGCTGGCCGTGGCAGGCGGCCGGCTGGAGGAAATGACCTTCCTCCAGCCCTTCCCGGCCCGGAAGCGACGGGCTCTGCTGCGGGCCTCTGGTGTGCGGAGGATCGACCGAGAGGAGAAGCGAGAGCTGCAGGCCCTGCGCCAGTCCCGGGAGGACTGTGGCTGTCGCTGCGACAGAGTCTGTGATCCCGAGACCTGCAGCTGCAGCCTGGCGGGCATCAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003845:ENSBTAT00000005016:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACCGTCTTCTACTTCCC
R:
AGGGCTGGAGGAAGGTCATTT
Band lengths:
342-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]