MmuINT0043179 @ mm10
Intron Retention
Gene
ENSMUSG00000032515 | Csrnp1
Description
cysteine-serine-rich nuclear protein 1 [Source:MGI Symbol;Acc:MGI:2387989]
Coordinates
chr9:119973364-119974413:-
Coord C1 exon
chr9:119974154-119974413
Coord A exon
chr9:119973679-119974153
Coord C2 exon
chr9:119973364-119973678
Length
475 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
CCGTCTTTCTGTACTTATAGTTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
CCCCGTCCATCCTGAAGCGGGCTCCTCGGGAGCGTCCAGGTCACGTGGCCTTTAACGGCATCACCGTCTACTATTTCCCACGGTGCCAGGGATTCACCAGTGTGCCCAGCCGTGGTGGCTGTACCCTGGGCATGGCTTCTCGGCACAGCACCTGCCGCCTTTTCTCCTTAGCTGAGTTTACACAGGAGCAGGTCCGGGCTCGGCGTGAGAAGCTCCGCCGCCGTTTAAAGGAGGAGAAGCTGGAGATGCTGAGGTGGAAG
Seq A exon
GTACGGGAGGTTTGCACGTTGCGGAGTTGTTGGTGTTAGGGGAGATTCAATGGCTGGGCTATAGCTCAGGCAGGGAGAGCGCCTCCTAGTGGGGAGGAGGACCTGGTGTCCATCACCAGCACTGCATAAACCAGGTATCTTGGTGCACCCATCGTCCTGGAACTTGGGTGGTGAAAGCCGAGGAATCAGGGATTCGAGGTCATCCTCCGCAAGCTTGAGGCCATGGCCCTTTCCCAAATGAAAGTAGTCGGCTTCAGACCACAGGCTAGGCCCTGGGCATAAATAATGCTTGAATCTTCCTAGCTGAATCCGATCAGCCGGCTAGACTGATCTGACACTGCCAGTACATCGGGGTTTGAGTAAGAGATCCTTGTAGCTGTGGAGCACAGTGTGTACCCCTCCCCCACAGACAGCACCCCACTCTCTGGGAGAGCTAAATCTCTCTCTCTCTCACACCGTCTTTCTGTACTTATAG
Seq C2 exon
TTTTCAGTGGCTGGAGTTCCGGAGTCAGGGGCAGGCGTGCCTCTCACAGCGGATGCCATCGATGACGCCTCTGTAGAGGAGGACTTGGCAGTGGCCGTGGCAAATGGCCGCCTGGAGGAAGCCAATTTCCTCCAGCCCCATCCACCTCGGCAGCGACGGGCTCTCCTTCGGGCTTCCGGCGTTCGAAGGATTGACCGAGAGGAGAAGCGGGAGCTGCAGGTGCTGCGCCAGTCCCGGGAGGATTGTGGTTGTCACTGTGATGGCGTCTGTGACCCTGAGACCTGCAGTTGCAGCTTGGCCGGCATTAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032515:ENSMUST00000035101:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGTTTACACAGGAGCAGG
R:
AGACGCCATCACAGTGACAAC
Band lengths:
358-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types