HsaINT0042478 @ hg38
Intron Retention
Gene
ENSG00000144655 | CSRNP1
Description
cysteine and serine rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
Coordinates
chr3:39144137-39145256:-
Coord C1 exon
chr3:39144997-39145256
Coord A exon
chr3:39144452-39144996
Coord C2 exon
chr3:39144137-39144451
Length
545 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CCTCTTTCCTGTGGATGCAGCTT
3' ss Score
6
Exon sequences
Seq C1 exon
CCCTGTCTATCCTGAAGCGGGCTCGCCGGGAGCGCCCAGGCCGTGTAGCCTTTGATGGGATCACCGTCTTCTACTTCCCCCGCTGCCAGGGCTTCACCAGTGTGCCCAGCCGTGGTGGCTGTACTCTGGGTATGGCCCTTCGCCACAGTGCTTGCCGTCGCTTCTCTTTGGCTGAGTTTGCGCAGGAGCAAGCCCGTGCACGGCACGAGAAGCTCCGCCAGCGCTTGAAAGAGGAGAAGTTGGAGATGCTGCAGTGGAAG
Seq A exon
GTAGAGAGAGTCCTCTCCGTGGCGCACCTCCTGAGGCAGCTCCTGGAGTCCTAACCTTGAGGGGTGGGCGTACCAGGGGTGGGTGCTGACTTGCTCATTATGGTTATGGGGAAACAGGCCTGTGGGCCTGGTGATTGGCTTGATTGGAGCCTGTTGCCTGGGTTGTCTGCAACAGGAGGCGCAGAGGAGGGCTCGTGTCTATTTGCTGCAGGGGCTGGGGGCATGATACCTGAATCTGAACTTTTTGGAGAGGGGGATGTGAAGTTGATATGAACTGGAGGGGGTGCGTATCTGTCTGGTTAGGAAAGGGAGTCTGTCCATGATCTAGGGAATGCCATGAGTAGGATATCTCTTTTTTTTTTTTTCAAATGCCCTGAGGGCAGTTTTCTTGGCTGTCCTGTTCACTGTCTGACACACAGTGCCCATCGCAGATTAAGCACGAGTAGTGGGGGGGTAAGCACTTGGGGAGGGTTTGTCTAGTGACAGTAGGGCTAAGCCCATGTCCATGTCTGTGCTTCTTACATCCCTCTTTCCTGTGGATGCAG
Seq C2 exon
CTTTCGGCAGCTGGGGTACCCCAGGCAGAGGCAGGGCTGCCACCTGTGGTGGATGCCATTGATGACGCCTCTGTGGAGGAGGACTTGGCAGTCGCTGTGGCAGGTGGCCGGTTGGAAGAAGTGAGCTTCCTACAGCCCTACCCAGCCCGGCGACGTCGAGCTCTGCTGAGGGCTTCAGGTGTGCGAAGGATCGATCGGGAGGAGAAGCGGGAGCTGCAGGCACTGCGCCAATCCCGGGAGGATTGTGGCTGTCACTGCGATAGGATCTGCGACCCTGAGACCTGCAGCTGCAGCCTGGCAGGCATCAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144655:ENST00000273153:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCGTCTTCTACTTCCCCC
R:
GGTAGGGCTGTAGGAAGCTCA
Band lengths:
342-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development