RnoINT0042832 @ rn6
Intron Retention
Gene
ENSRNOG00000033433 | Csrnp1
Description
cysteine and serine rich nuclear protein 1 [Source:RGD Symbol;Acc:1305999]
Coordinates
chr8:128662067-128663048:-
Coord C1 exon
chr8:128662789-128663048
Coord A exon
chr8:128662382-128662788
Coord C2 exon
chr8:128662067-128662381
Length
407 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGA
5' ss Score
9.78
3' ss Seq
CCCCTTTCCTGCCCTTGCAGCTT
3' ss Score
11.51
Exon sequences
Seq C1 exon
CCCCATCCATCCTGAAGCGGGCTCCTCGGGAGCGTCCGGGTCACGTGGCCTTCGATGGCATCACTGTCTACTATTTCCCGCGGTGCCAGGGATTCACCAGTGTGCCCAGCCATGGTGGCTGTACCCTGGGCATGGCTTCTCGTCATAGCACCTGCCGCCTCTTCTCCTTAGCCGAGTTTAAACAGGAGCAGTTCCGGGCTCGGCGTGAGAAGCTCCGTCGGCGTTTAAAGGAGGAGAAGCTAGAGATGCTGAAATGGAAG
Seq A exon
GTACGAGGCCCTGGTGCCGAGGCCCTGGTGCCGTTTGCGCATTTTGGTGCTGGGAGTTTCGATGGCTGGGGCTATAGTTCAGGCAGGAAGAGTGTCTGCCTAGTGGAAAGGAGGTCCTAGTGCTCAGCAAGCAGCACTGGGTAAACCAGGCATCCTGGAACTTGGGTGGTGAAGGAATCAGGGATTCAAGGTCATCCTCAGCAAGCTTGAGGCCACGGACCATTCTCAAAAGAAAAGTAGTCGGCTTCAGACAAAAGCGCAAGGGCCCGGGCATCTAGTTAGAGAAGGGGTTTTGTATCTGAGCTAAGGTGACTTAAGAGATCCTTGTAGATGCTGAGGACATTGTACCTCACACTCTGGGAGAGCTAAATCTCTGTGTCTCTCACACCCCTTTCCTGCCCTTGCAG
Seq C2 exon
CTTTCAGTGTCCGGAGTTCCGGAGGCAGGGGCAGACGTGCCGCTCACAGTGGACGCCATCGATGACGCTTCTGTAGAGGAGGACTTGGCAGTGGCCGTGGCAGGTGGCCGCCTGGAGGAAGCGAATTTCCTACAGCCCTATCCACCTCGGCAGCGACGGGCCCTACTTCGCGCTTCCGGTGTTCGAAGGATTGACCGAGAGGAGAAGCGCGAGCTGCAGGCGCTACGCCAATCCCGGGAGGATTGTGGTTGTCACTGTGATGGCGTCTGTGACCCTGAGACCTGCAGTTGCATCCTGGCCGGCATTAAATGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033433:ENSRNOT00000050543:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.172 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACTATTTCCCGCGGTGC
R:
CGAGGTGGATAGGGCTGTAGG
Band lengths:
344-751
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]