BtaINT0044804 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003845 | CSRNP1
Description
cysteine-serine-rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
Coordinates
chr22:12520393-12521935:-
Coord C1 exon
chr22:12521621-12521935
Coord A exon
chr22:12521525-12521620
Coord C2 exon
chr22:12520393-12521524
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ACCTCTATTTTGCTTTACAGATG
3' ss Score
11.49
Exon sequences
Seq C1 exon
CTTTCGGAGACTGGGGTGCCCAAGACGGAGGCCGGCCTGCCGCTCACTGTGGACGCCATCGATGACGCCTCTGTGGAGGAGGACTTGGCGCTGGCCGTGGCAGGCGGCCGGCTGGAGGAAATGACCTTCCTCCAGCCCTTCCCGGCCCGGAAGCGACGGGCTCTGCTGCGGGCCTCTGGTGTGCGGAGGATCGACCGAGAGGAGAAGCGAGAGCTGCAGGCCCTGCGCCAGTCCCGGGAGGACTGTGGCTGTCGCTGCGACAGAGTCTGTGATCCCGAGACCTGCAGCTGCAGCCTGGCGGGCATCAAGTGCCAG
Seq A exon
GTACTGGGGCTCGGCGGGGCTGGGAAGGCAAGCCTGGGTCGGGGACTTCTCCGGGCTCCACCGGATCTTCACTGGAACCTCTATTTTGCTTTACAG
Seq C2 exon
ATGGATCACACAGCGTTCCCCTGTGGTTGCTGCAGGGAGGGCTGTGAGAATCCGAAGGGCCGTGTGGAATTTAATCAGGCTCGAGTTCAGACCCATTTCATTCACACACTCACCCGCCTGCAGCTGGAGCAGGGGGCCGAGAGCCTTGGGGAGCTGGAGGCCCCAGCCCAGGGTGGCACTCCCAGCCCCGGCGAGCAGGTCTTGGCCTCTGCGTTCCCCCTAGCCAAGCCCCCTGTGAGCAGCGAACTGGGAGACAACAGCTGCAGCAGCGACATGACCGATTCGTCCACAGCCTCAGGCACCAGCGAGGCCCTGGATGGCCCTGCCCGCCTGGCCCTGCCCGGCCCTGGCTTCCAGCCTGGCGTGGATGATGATGGCCTGGCTCGTATCCTGAGCTTCAGTGACTCTGAACTAGGTGGACACGAGGAAGAGGAGGAGGATGGGGGTGTGGGCGGCCTGGACAATCTCAGCTGCTTCCACCCAGCTGACATCTTTGGTACTGGTGACCTCACTGGCCTGGCCAGCTGGACCCACAGCTATTCCAGTTCCAGCCTCACGTCAGGCATCCTGGATGAAAATGCCAACCTGGATGCCAGCTGCTTCCTCAATAGCGGCCTTGAAGGCTTGGGCGAGGGCAGCTTCCCTGGCCCCTTGGTGCCAGCCAGCACGGACGCCGGCCAGAGCAGCTCAGTGGACCTCAGCTTGTCCTCCTGCGACTCCTTCGAGCTGCTCCAGGCCCTGCCAGACTACAGTCTGGGGCCCCACTACACCTCCCGGAAGGTGTCTGATAGCCTGGACCACCTCGAGGTGCCCCACTTCACCTTGCCTGCCTTCTCTCCCCCTGCGGATACCAGCACTTGCTTCCTGGAGTCCATCATGGGCTTGACTGAGCCCGCTGCCGAGGCCCTGGCTCCCTTTGTGGATGGCCAGTTGTTTGAGGACACCACCCCGGCGTCGCTGGTGGAACCTGTGCCTGTGTGAGGGTTAGGGTGCCTTTTCCTGGCCCCAAGAACCCTGTTGCTGCTTTGTTGTAATTTGGGGGCTCCCCAAGGTCTGTATGTAATGGTCCCCCGTTGGCTGGCTCCCATGTGGGCACTCCTACTAATTTTCATGCAACACTCTGGATTGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003845:ENSBTAT00000005016:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.359
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGTGATCCCGAGACCTG
R:
GCGGGTGAGTGTGTGAATGAA
Band lengths:
169-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]