RnoINT0042833 @ rn6
Intron Retention
Gene
ENSRNOG00000033433 | Csrnp1
Description
cysteine and serine rich nuclear protein 1 [Source:RGD Symbol;Acc:1305999]
Coordinates
chr8:128659884-128662381:-
Coord C1 exon
chr8:128662067-128662381
Coord A exon
chr8:128661875-128662066
Coord C2 exon
chr8:128659884-128661874
Length
192 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CGCATTGTCTTTCTCTGCAGATG
3' ss Score
12.16
Exon sequences
Seq C1 exon
CTTTCAGTGTCCGGAGTTCCGGAGGCAGGGGCAGACGTGCCGCTCACAGTGGACGCCATCGATGACGCTTCTGTAGAGGAGGACTTGGCAGTGGCCGTGGCAGGTGGCCGCCTGGAGGAAGCGAATTTCCTACAGCCCTATCCACCTCGGCAGCGACGGGCCCTACTTCGCGCTTCCGGTGTTCGAAGGATTGACCGAGAGGAGAAGCGCGAGCTGCAGGCGCTACGCCAATCCCGGGAGGATTGTGGTTGTCACTGTGATGGCGTCTGTGACCCTGAGACCTGCAGTTGCATCCTGGCCGGCATTAAATGCCAG
Seq A exon
GTGCGTGGTTGTATTGGGTAGGATAAGGGGGTGTGCCTATAATCTCAGCACTCAGGAGGGTGTCGGAGGCTGGTGGATTTCTGAGTTCCACAACAGCCAGGGTTACATAGGGAAACCCTGTTGGTGGGGAGCTGGGCCTGCTGGCTTCTTGCATCCTCGAAGTCCTCACTTTCGCATTGTCTTTCTCTGCAG
Seq C2 exon
ATGGATCACACGTCCTTCCCCTGTGGCTGCTGCAGCGAGGGCTGTGAGAACCCCCATGGTCGAGTGGAATTCAATCAGGCGAGAGTTCAGACACACTTCATCCACACGCTCACCCGCCTGCAGATGGAGCAGGGTGCGGAGAGTTTGGGGGACCCGGAGTCCCCCATGGAGGACGTTCCTGTCGAACAAACCGTGGTTTCCCCCTTTCCTCCTTCCAAACCCACTATGAGCAATGACCTGGGGGACAGCAGCTGTGGCAGCGACATGACAGACTCTTCCACGACCTACTCCTCTGGCGGCAGTGGCAGCCGCAGCGAGGCTCCGAACCATCTTGCCCACCCCAGCCTGCCAGGTTCCAGCTTCCGGTCTGGCATAGATGAAGACAGCCTGGAACAGATCCTGAATTTCAGTGACTCTGACCTCGGTATTGAGGAAGAAGAGGAGGAGGGAGGGAGTGTGGGCAACTTGGATAACCTCAGCTGTTTTCATTTGGCTGACATCTTTGGTACCGGTGACCCCGGCAGCCTGGCTAGCTGGACACACAGCCAGTTTGGCTCTAGCCTTCCATCGGGCATCCTAGATGAGAATGCCAACCTGGACGCCAGCTGCTTCCTAAGCAGCGGACTCGAAGGGTTGAGAGAAGGTAGCCTCCCCAGCAGTTCTGGGTCCCCTGAGGGGGAAGCCGCCCAGAGCAGCTCCTTGGACCTCAGTTTATCCTCCTGTGACTCCTTTGAGCTTCTCCAATCTCTGCCAGATTATAGTCTGGGGCCTCACTATACTTCCCGAAGGGTATCTGGCAGCCTGGACAGCCTTGAGACCTTCCACCCTTCGCCCAGCTTCTCTCCACCGAGGGATGCCAGCTTCCTGGATTCTCTCATAGGCCTGTCTGAGCCGGTTACAGATGTCCTGGCGCCCCTTCTGGAGAGCCAGTTTGAGGACACTGCTGTGGTGCCTTTGGACCCTGTGCCTGTGTAAGGATTGAGATGACTTTTTCCTGCCCTGAGACCCTGTTGCTGCTTTTTATGTGATCTTGGTGTCCCCCAAGGTCTGTGTATGTAACGGTCTCCCGTGGGCTGGTTCTGCCCCCGTGCCATGTGGGCAATCCTCTATTTTTACAGTAACACTCTAGATTTATTTATTTTTTTATGTTTTTCTGTACTGAAGGGAGGGTGGGAAGGGTATCCCTCTTTCAATGCCTGGCCTCTATGTCCAAACAGAGGTCTCCCACCTCCTACTGTATGCCTGGAGGAGGAAGGGGCAGGGTTCACATCCCCTCTTTCTGTACTGTAAAATGCTCCTTGGTCCAAAGACAGCTGAAAAGCAGGCCTTAGGGTTTCCTGTGGACCGTGGGAGCTAGGTCTTCTGGACTGTGAAGATGTAATTTATTTCTGTAATTTATTTGGGGACTGAGACAGCAGTGGTTGGGCCTCTCTGGCAGGTGGGCGGTGTTGAGGCAAAGTCTTCGGTGTCCCCCGCCGGTCTGGGCTTCGGTGTGGCGTGTAGGTTCGAGCTGAGCAGACGGAGGCTGTGCTTGACCATCGGTGATCAAAACTCCCTCTGCCCCCTGCCCAGACGCTCTAACATGCCCTCTGTCCATTTCCCTCTCCCCAAGGCCATGGGTTATAAAGGCCCTATGTAGGATGGGGAGCCAGAGGCCCTAAGACATGAAGCACACCCCAGATCACTGTCTCTAGCCTTTCTGGGCACTGAATCCATCCTGACCCACCACACACCCCCCGGCCAGTTGGCAAGAAAGAGGTGGCTCTTGGGGGCTTTTATGCCCTTCATTAGCTGATGTTGGATTTTATATGCATTTTTATATTGTCTCTAAGTGTCAGAACTATAATTTATTCATTTCTCTGTGTGTGTGTGTGCCAAGAAACGCAGGCTCTGGGCCTGCCTCCTTGCCCAGGAGGCCTTGCCAGCCTGTGTGCTTGTGAGAACACATTGTACCTGAGCTGACAGGTACCAATAAAGACACTCTATTTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033433:ENSRNOT00000050543:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.463
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCGGTGTTCGAAGGATT
R:
GCGTGTGGATGAAGTGTGTCT
Band lengths:
253-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]