GgaINT0097828 @ galGal4
Intron Retention
Gene
ENSGALG00000027905 | CSRNP1
Description
cysteine-serine-rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
Coordinates
chr2:5233123-5238803:+
Coord C1 exon
chr2:5233123-5233419
Coord A exon
chr2:5233420-5234386
Coord C2 exon
chr2:5234387-5238803
Length
967 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CCCATGTTCTTCCCCCTCAGATG
3' ss Score
11.17
Exon sequences
Seq C1 exon
CTCACCATGAATGGCACAAAGGAATCGGAGGAAGCCAACCAGCTCACCATTGAGGACATCTCTGACGATGACATTGACGTCAGCAATGTGGACCTGGAGGATGGCTTTTTCCTCCAGCCCTACCCGGCCAAGAAGAGGCGTGCACTGCTCAAAGCTGTTGGGGTGAAGAAGATTGACAAGGAGGAGAAGCGGGAGCTGCACAGCATCCGTCTGTCCCGGGAGGACTGCGGCTGTGACTGTCAGGAGGTCTGCGATCCCGAGACCTGCAGCTGCAGCTTGGCAGGCATTAAGTGCCAG
Seq A exon
GTACTGCCCTATCTCATGCATCTCCTCAAGGTGAAGTGGGAAAACCTCTAGGAGATACTACTGGAAAGCATCCTCCTCCCAAATTGCTCATCCCATGAGGATGTGTTAGTGCACCCACATGGTGAATGGCAGAGGGAGACGGACTGTGGGGGATGCCTTGGCAAAGAGAAGCTCTTCGCTCCTCCCACGAGGTTCCAATTTCTCCTCCCCCCTTGGTTTTATTTTTATTCTCCTTGGTGTGTATCCCAGCTTCCATCGTGCCTGGGAGCATCAGTGTCAGCCTGCAACCAGCTCTGCAGGTCCACCTGCACATCACAGGGTAACACCTGTAGCTGCACTTAGTTACCTTTATTGATTTTTCTTTATATCTTATGTTTTCGGAGGCGCCTACCCTGCTGTGTTTGCAGGGAGTATCCACTACTGTGGGTGCTGCTCACTTGCTCTGTGCTGTGGTTGCAGGCTGGGTGGTGTAGGGTGTGTGTGTGCAGACAGTTGGATGTGCACAGGAGGACTCGTGCTCCATGTGCATGTCACAGCCCCCCTCTAGTGGCTGCTCACAGCTGGGACGTAAAAGTGCCGCAGATACCAGTGAAGCAATTTGGCCTTCATCCTGTAGAGAGGCAGATGCTCATGATATAGATCAGATATTAAATATCGTGGTGCAATATACAAAAATTCACATTTGCCCAGTCATGTCTCCTTTTGGAGCATTACATTTTGCTTTTTTTTTTGTTTTCTTTTAAAATCCTTTAACTTTTTTCGGTTGTATTGAAATTCATCGTTGTTAAGACAACTCTTCCAAAGAGCAGGTGGTGTGGGATTTTGGTTTTTTTACCTTTCTGTATTTTTTGGCTTGCTTTTAAACCTCTCAGTCATGCTGCAAAGGCGATGTGTGAGAGTTTGGGGGTGAATCAAGGTGGCTTGGGCTTTGGGCGAGGGTCCTCACCCCCATGTTCTTCCCCCTCAG
Seq C2 exon
ATGGACCACACATCCTTCCCCTGTGGCTGTACAAAGGACGGCTGCGGCAACACAGAGGGCAGGATCGAGTTCAACCAGGCCCGGGTGCAGACCCACTTCATCCACACCATCATGAAGCTGGAGCTGGAGAAGCAGCAGCAGAGCAGTGAGGGGGTGGCAGAGGTTGAACCTCCCTTCCGGGAGCGGTTGCCTCAGCTGGGCTGCGCAGCAGCAAAGGGGCCCTTGGAAGAACGCACGGCGCCGCTGGCCCCCGCCTTCCAGTTCAGCCCTGAGTTGGAAGCCCTGGGGGAGAACAGCTGCAGCAGCGACATGACGGACTCCTCCATCTCCTCCCACCCCAGCGAGGACCTGGAGGAACCCTACGAGAGCCTCCCCTCCGACAAGTCCCAGTCGGACATCGATGACGATGGCTTGGCACGCATCCTCCACTTCAACGATTCGGATGCCGAGGAGGAGGGAGACCGCTGCCAGGACAACCTGAGCTGTTTCCACCCTGCCGACTTCTTCATTGAGGACCATGGCTGCGAGGCCAAGCCTGGCCCTGGGGCCTCATCCCACCTCTCTGAGTGCCTGGACGAGAATGCCAACCAGGATAGTGGTGGACTGCTGGAGGAGGCCATGCACGTGTGCTGTGACGGGGTGTCGTGCTGTGCCCCAGCCCCAGCTGAGTCGTGTTCCAAGAGCTATGCCGACCTCAGCCTTTCCTCTGACTCCTTGGATTTCTTCCAGTCCTTCTCGGACTATAACTTGGGACCCCTTTACAACTCCTTGAAGGAGTATGAGAACCTTGATAACTTCTCAGCGTTACAGTTTCAGTTGCCTAATTTCCCCGGTTTCCCGCAAGCTGGAGATCAGGGCTCCTGTTTCTTGGAGTCTCTCATTGGTTTGTCCGAATCCGTCCCCGAAACTCCAGCCCCTTTCACAGACAATCAGCTTTTGGAGGACGCCATCAAGTCATCGCTGATGGAAACAGTGAAGGTGTGAAGCGCCGGGCTGGCTGGGAATGAGAAGGACTGGCAGCATCGTGGTGCTGAAACCAAAGCCGAAGAACGATTGGACGGGCAAACTTTCACTTGTGCTCTGTGAAAAGGATTAAAAAAAAAAAAAAATCAGACTTTCTGAGCAGACAAACTATTTTTGGTCTTTATAGAATGTGGACGTTTTGACATACTGCAGCTACAATCAGTTCTCTTGCTGTTTGTGCAAAGATTTCTAAACTTTCATGATGGGGTCGGGGGGGGGGAGGGAGGGACGAAGACTTTCAAGTATGAATTTCCTTGTGTTTTGTATGCAAAGACCTGTTGAGAAATGCTCCTTGCGAATGTTGCCAGTCGTACACACAGCCCCTTCTAGAAACGTTTCGGTGTCGCGGGAACTTTTTAAGACAACTTTTGAAGCTGTATTTATTGTGAAAATTTGTGATTTGCATAAGAGCCAGACCAACACGCTCTCGAGTTTAAATCGGAAAAGGTTTACAGAAGAGATCCGTACACTATATACATAATCATCCTTCATCTATTTATTGCAAATTCCAGAATTTAACTAGCCACTGAAGCTTGAACTAGCATGAAACCTTATTTAAATTGGTAATACCTCAGATGTATTATGTGCACAATCATATTTTTTGCATAATATATCTGTATTTATTTATTTTCTACCTGTAGTACATGAATAGCACTGTGGTTTATCAATGACCTGGAAGGGCAGTAAGGTCTCCAGCAGCACACGTCCTAAAGATGACCCCATTGTCTGAGTCTGGGAGGTGCTGGCTGTTTGGTCTTCACCTCACATTGCTACAAGAGCTGAATGCAAGGTGGGTGGGAGGGGAGGGATGAGGGAGGTGTTCCTACAGCATCCTCTGGTAGTGAACCATCCTTTGTAGACGTGATAGCACGTAGTCTGATATCCGTGATACCGCTATAGGGAGCAAAACAAGCAGAACCATCCTCTGTTTGAGAAACATGAGCTAGCTCTATTTAATTAACAAAAACCAACAAAATCTTTCCATAAATTATTTTCTAATTTATTGAATTTCCTAAGGATTTGGCCATGAGATCTTTTGTGATCACTTATGGTGCCTGAATATGCAGAGGAACTGCCAGCGAGGGAGGAAGCCAGGGTAACCTTTGCAGCCCGTGGGGCTTTGGAGAGCAGAATGAAGGGCAGCAGCACCCTTCGGACTCCCAGATATTGAGGGTATGGCAGCTCCAGAAACTTGTGGGCCAGGCGGTTTATACTCTTTTTTTTAATAGATAAATTGAGTAGATCAAGGAAAGGAGATGATTATGAAGGTTGTTGCATTATTTATTGAGTACGATTGCAGAGAGGAGGAAGAAAGAGAAATGGTTGTACTTAGGAGGGACATTAGAGGCCTACTTAGCTTTTTGTTGTCTGAATCAGCCTGAGAACATGACACTATTTGGCCATGCCATGTAACTGGACCCAAATCTGCATGCCAGTGATACACTAAGTGCCTACGCCAGCAGCGTGAGCGTCTAGGTATCTCGCTGGAAACCCACAACTGTCCATTGAAATCCCCCCCTTGCGGAAGGTGCAGAGTCACCCTGTTGGGAGGAATCATCCCAAAATGTGGGTCTGGGGACCTTTCCCTTAGCTGAACCCTGGATGTCCCCAACGGCAGGGATGGGGCTGCTTGGGACCTGCCACTTGATGGACAAGTAGTCTTGCCATGGCACCATGGCACCCTGCCAGCAATTTGGAAAGCTTCTGGCGTACAAATAGCGCGAAGGCTGGTTGTTTGTTTGTTTGTTTGTTTTTAAATTATTGTTATTAATTATTATTATTATTATTTAATTGTACGTCTTCTCTGGTATTGAGCCGGTCAACCTTGAAGCAGAGCCAACCCGCCATGTCCTCCCACGAGGCATCACCCTGGGGCCATCCCCATGGGCAGGAGGGCGACTGTAGGAATACTACTGGCAGATGGAGGATTTCCTGGATATCTATCTATCTATCTATCTAATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTGTGTTATTTTTTTGTTGTCGCCGTCGTTTCTTTTGACTGAAAATCCCCTTTGGTTATCTTCTGGTGGTAGTTGCTATCCTTCAGACTGCATCAAAAATACTGACTGTTGGAAGTCTGGTACCGTTCTGTATTTATTGGCACTAATATATTTTATAACATTCCTCAGTTTCTCTGCATATATATATATTTATATATATAAAATATAAGCATATATTTTATATATATATATACACACAACACTTTTTGTAATGAATGACGGGGATTGACTCCTGCCTTTGTGGATTTTTTTTTCCTATAATTTATTCATTTTATTTGTGTTGGTGCCAAAAAAAAAAAAAAAGGATTTTTTCTCTTTTTTTTTTTTTTTTTTTCCTTTTCAAGGCACTGAATTGTAAATATATAATTTTGTTGTTTGTTTGTTTTTTTTCTTCTCGGTATCTATGTAAAAAGTTGCCTGTTAAACAGTTTTAAAACTGGCTATTTATTGACACAATCTGTAATTATCTAATGTATTGATTGAAACACTTTGGTTTCAACATAGCTTTATTTTAGCTTTCTTTGTGTATATATTGTGATTATGTTGCTTAAGGGTACAAGTTAAAAAAAAATGCTTTATTTTTACCTTATCCATTTGCATTTGTTTAAAAAAAAAAAAGAGGAAAAAAAGCATATTTGTCTACAGCTGCTGTCTCTCATTTCATCAAAGCAATATGAAGAAATTTCCATTACACTTTCAATAAAATAATTTTGTTTGAATGCGGCAGTGTCTTCGCCCTTCTCCTTGCACCTTCAGCATGACTGGTTGTTACCTTCTTTTCTCTGCTGTGGCTCGGACGCCTGGATGAGGGGTGTGAGAGCTGTACTGCATGTCACAGCTGTTGGTTTTTTGTTTGTTTTTGCTTTTTTTGCTTTTTTTGGACTGTTTTGAAGCTCATCGCCCCAGGGCTCCCACCCCAAATAATGAGATGGATCTCAAAATCATGACTTTGCCCAGGGACAGGTGTCTTCCCAGTGAGGCACCCAGTACCACGATGAAGGAAGAGCATCAAAGGACGCCCTTGGGGTGGGACACTGCCCTCATCCCCATTCCTGCAGCTCCGTCCAGACCTGGACATGGAAACTGTACTGGGCAGAGCATCTTTAGCAAGGAAATGGGAAGCGGTGGTTGTGTCAAAGCCCAACAAAGTGCTGGCACAGTGGGTTGGAGTTGTCTGGCCAGAAGGTCACTGCGTTGAGGCCATCTCCTGGGCTGTCCCACTAATGAAGCTCTTTCTGCAGGACCTTCCTGCTGACCGGTGCCAGCCCGTGATGGGCGGCACTGAGGATTCAGAAATGGAAAGGCCAAATTCATCGGTGAGCACAAATCAGAGATGTGAACACGGAACATGAGCTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027905:ENSGALT00000044280:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.275
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATCGGAGGAAGCCAACCAG
R:
CTGGTTGAACTCGATCCTGCC
Band lengths:
354-1321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]