MmuINT0043180 @ mm10
Intron Retention
Gene
ENSMUSG00000032515 | Csrnp1
Description
cysteine-serine-rich nuclear protein 1 [Source:MGI Symbol;Acc:MGI:2387989]
Coordinates
chr9:119971163-119973678:-
Coord C1 exon
chr9:119973364-119973678
Coord A exon
chr9:119973212-119973363
Coord C2 exon
chr9:119971163-119973211
Length
152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
GGCTTTGTCTTTCTCTGCAGATG
3' ss Score
12.63
Exon sequences
Seq C1 exon
TTTTCAGTGGCTGGAGTTCCGGAGTCAGGGGCAGGCGTGCCTCTCACAGCGGATGCCATCGATGACGCCTCTGTAGAGGAGGACTTGGCAGTGGCCGTGGCAAATGGCCGCCTGGAGGAAGCCAATTTCCTCCAGCCCCATCCACCTCGGCAGCGACGGGCTCTCCTTCGGGCTTCCGGCGTTCGAAGGATTGACCGAGAGGAGAAGCGGGAGCTGCAGGTGCTGCGCCAGTCCCGGGAGGATTGTGGTTGTCACTGTGATGGCGTCTGTGACCCTGAGACCTGCAGTTGCAGCTTGGCCGGCATTAAGTGCCAG
Seq A exon
GTGCGTGGTCGGACTGGGTAAGATAAGGGGGGTGTGCCTATAATCCCAGTACTCGGGCAGGGCTACACAGGGAAGCCCTGTCTGTGGGGAGCCGGGCCTGCTGGCTTCTTGCATCTCCGAAGTTCTCACTTTGGCTTTGTCTTTCTCTGCAG
Seq C2 exon
ATGGATCACACGTCCTTCCCCTGTGGCTGCTGCAGGGAGGGCTGCGAGAACCCCAATGGTCGAGTGGAATTCAATCAGACAAGAGTTCAGACGCACTTCATTCACACCCTCACCCGCCTGCAGATGGAGCAGGGTGCCGAGAGCTTGGGGGACCTGGAGTCCCCCGTGGAGGACACTCCTGTTGAACAAGCCGCGCTTTCCCCCTTTCCGCCTTCCAAGCCCCCTGTGAGCAGTGAACTGGGGGACAGCAGTTGCAGCAGCGATATGACAGACTCTTCCACGACCTTGTCCTCTGGCAGCAGCGAGCCTCCAAACCACCCTGCCCACCCCAGCCTGCCAGGTCCCAGCTTCCGGTCTGGCGTAGATGAAGACAGCCTGGAACAGATCCTGAATTTCAGTGACTCTGACCTCGGAATTGAGGAGGAGGAGGAGGAGGGAGGGGGTGTGGGCAACTTGGATAACCTCAGCTGCTTCCATCTGGCTGACATCTTTGGTACCGGTGACCCCGGCAGCCTGGCCAGCTGGACTCACAGCCAGTCTGGCTCTAGCCTCGCATCGGGCATCCTAGATGAGAATGCCAACCTGGACGCCAGTTGCTTCCTGAACAGCGGACTTGGAGGGCTGAGAGAAGGTAGCCTCCCTGGCAGTTCTGGGTCCCCTGAGGGGGACGCCGTCCAGAGCAGCTCCTGGGACCTCAGCTTATCCTCCTGTGACTCCTTTGAGCTTCTCCAGGCTCTGCCAGATTATAGTCTGGGACCTCACTATACTTCCCGAAGGGTGTCGGGCAGCCCGGATAGCCTTGAGACCTTCCACCCATTGCCCAGCTTCTCTCCACCACGGGATGCGAGCACTTGCTTCCTGGAGTCTCTCGTGGGCCTGTCTGAGCCGGTTACAGAAGTCCTGGCACCCCTTCTGGAGAGCCAGTTTGAGGATGCTGCCTTGGCACCTTTGTTGGAGCCTGTGCCAGTGTAAGGATTAAGGTGCCTTCTTCCTGCCCTGAGACCCTGTTGCTGCTCTTTGTGATCTTGGGGTTCCCCGAGGTCTATGTATGTAACGGTCTCCTACGGGCTGGTCCTGCTCATGGTGCCATGTGGGCACCCTCTATTTTTACATTAACACTCTGAATTTATTTATTTTTTTATGTTTTTCTGTACTGAAGAAGGGAGGGTGGGGAGGGTACCCCTCTTTCAATGCCTGGTCTCTTTATGTCCAAACAGAGGTCTTCCACCTCCTACTGTATGCCTGAAGGAGGAAGGGGCGGGGCTCTCCTGGAGCCTCGCAGTCCCTCTTTCTGTACTGTAAGATGCTCCTTGCTCCAAAGACAGCGACGGCTGAGCGCAGGGCCTTAGGGGCTTCTGTGAACCATAGGAGCTAGGTCTTCTGGACTGTGAAGATGTAATTTATATCTGTAATTTATTTGGGGATGGAGACGGCAGTGGTGGAGCCTCTCTGGCGGGTGGGCAGGCAGTGTTGGGGCCGAGGCTTCGGTGTACCCTGCCAGTCTGGGCTTCGGTGTGGTGTGTGGGTTCGAGTTTATGGCTGCTCTATTAAACAGCGGCCTGGCTCAACTGAGCAGACAGAGGCTGTGCTTGACCAGCGGTGACCAAAACCCCTTCTGCCCCCTTCCCAGAAACTCTACTTGCCCTCTTTCCAATTCCCTCTCCCCAAGGCCATGGATTATAAAGCCCCTCTGTAAGATGGTGAGCCAGGGGCCCTAAGAGGGCATGAAGCACACCCTGATCACTGTCTCAGGCCTTTCTGGGCACTGACTCGACCCTGGCCCACCTCACGCCCCCAGGCCAGTTGGCAACTGGTGGCTCTTGAGAGCTCTTACGCCCTTCATTAGCTGATGTTGGATTTTATATGCATTTTTTTATTGTCTCTAAGTGTCAGAACTATAATTTATTCATTTCTTTGTGTGTGTGTGTGTGCCAAGAAACGCAGGCTCTGGGCCTGCCTCCTTGCCCAGGAGGCCTTGCCAGCCTGTGTGCTTGTGGGAACACACTGTACCTGAGCTGACAGGTACCAATAAAGATGCTCTATTTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032515:ENSMUST00000035101:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=NA C2=0.505
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGTGATGGCGTCTGTGAC
R:
CGGCTTGTTCAACAGGAGTGT
Band lengths:
256-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types