BtaINT0046184 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037795 | CYP2C87
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 87 (CYP2C87), mRNA. [Source:RefSeq mRNA;Acc:NM_001076427]
Coordinates
chr26:16042228-16043892:+
Coord C1 exon
chr26:16042228-16042388
Coord A exon
chr26:16042389-16043709
Coord C2 exon
chr26:16043710-16043892
Length
1321 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCGTAGTTTTCTCTTCTAGGTC
3' ss Score
10.9
Exon sequences
Seq C1 exon
GGTTGCCCTGTGATCCTACTTTCATCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTCCATTATTTTCCAGAACCGTTTTGATTATAAAGATCAGACTTTTTTAAATCTAATGAAAACAATAAATGAAAATATCAAGATTTTGGGCTCTCCGTGGATTCAG
Seq A exon
GTGAGGCCAAGGGCCTTTCTTCTGGAGGAATCACTTATTCTCTTTTTTCCATGAGGTCTAGTTCTCTATACACCAAGCTGTGAGGTGAAAGTGTGAAGAGCACAGCCCTGCCCAGAGCTTAGCATCATGGAGTGCTCATCTGGGGCTGCTGGCTGAGCCCTTTAATGTTAGACAGGAAAATACATGCCCACAATTCAGTCCTGTTGACACTGTTCAGTGGTTTTTATACCAATTTTCAAAGCCCAGCTTCCATAAACTACTTTGGTAACATCCCCAAAGCATGCCCACACCAATAGAAGGACTTCCAGGCCCTTCTGGAAAGGCTTCCATTACTCACAAGTCTTGTCATTCAGTTTCCACCTACTTACTACTCCACCACCTTAGCTGGCAGAAATACCTGCATTTAGGAAGGAGGAGAATCTCCTTTGAGTGAAAGAGTGCTGCCAGGGAACACTGACTGGGTTAGGACTGTTTGATGCTTCAGTTGGCATCCTAACTGACAAGGTAATTGCTTTGGGGATGACAAAAAAAAGTTTTTTTTTTTTTTTTTGGTGTAGCAACCACAAACCAACATCACGGGTGTACCCTATACTGAGCTGACACGTTCTGCCTTCTGCCTAAAAGACGGTGGTGTGACCTTACAGAGGTCACTTAAGTGCTCTGGTGCTCGGTTACTTTAGCCATAAGATGTTGAGTTTCGTGGTGTCTTTAGGACACTTTCTGGAGAAGGAAATGACAACCCACTCCAGTCCTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTGGGCTACAGTCCATGACTCGCAAAGAGTCAGACATGACTGAGCGACTTCACTTTCACTTTCTTCACTTAGGACCCTTTCAGTCCTATTAATAAAATACTTATTTTATGTTGGAGTCTATGAGACAGAGGTAGAAACATCAGGGACCAGCTGTGTGCTCTGTATCAGGATGTGCAAACTCTCTTAACCTCTGTTGTCATCTACAAAGTGTGAGTCATTGACCTTTGTGCTGACCCTTATTTCATGGTTGTAGAGAAGAACTGATGTGAAAAACAGGGAGAATTGATGTGAAGATGTTTTCATACTGGAAACATGATATGTACATATAGGAAATGATTATTTTTTTGATCCCTGACCAGAATTTTCTCCTTGAAATACTTCTATCAGCATAGAAAATTATGTATTTGTATAATAAAAATACTCCTCAACATTTACAGACCAGATTTATTTTAATATTTATACTACAATTTCCAACTAGGACTTGGCATGTAAGTTTTAACTATTTATTTAATAAACCGTAGTTTTCTCTTCTAG
Seq C2 exon
GTCCTCAATATTTTCCCTGTGCTCCTTGATTTTTTCCCATGGAGTTATAGTTATAAAAAACTTTATACAAATACTGCTTATGTAAAAAATTATGTTTTGGAGAAAACAAGGGAACACCAAGCATCCCTGGATATTAACAATCCTCGAGACTTTATTGATTGCTTCCTGATCAAGATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037795:ENSBTAT00000027159:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
NA
C2:
PF0006717=p450=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGCCCTGTGATCCTACTT
R:
GCTCCATCTTGATCAGGAAGCA
Band lengths:
342-1663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]