HsaINT0044264 @ hg19
Intron Retention
Gene
ENSG00000138115 | CYP2C8
Description
cytochrome P450, family 2, subfamily C, polypeptide 8 [Source:HGNC Symbol;Acc:2622]
Coordinates
chr10:96818092-96824717:-
Coord C1 exon
chr10:96824557-96824717
Coord A exon
chr10:96818269-96824556
Coord C2 exon
chr10:96818092-96818268
Length
6288 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
AATATTCTTTTCTCTTTTAGGTC
3' ss Score
12.68
Exon sequences
Seq C1 exon
CTTCACCCTGTGATCCCACTTTCATCCTGGGCTGTGCTCCCTGCAATGTGATCTGCTCCGTTGTTTTCCAGAAACGATTTGATTATAAAGATCAGAATTTTCTCACCCTGATGAAAAGATTCAATGAAAACTTCAGGATTCTGAACTCCCCATGGATCCAG
Seq A exon
GTAAGGCCAAGATTTTATTTTCCTTGGAAACCATTTATTCAAGGTTGTAGGGAAGACTTGGTTTAAAAATGAGAAAATTGATACTAAAATGCTTTTATACAATAAAAATGATGTATGAGTGAAGAAAATAATTACCACCTTTGATTTCCTGTTCAAAATTTTCAGCCTCCAATCTTTAGGTACAGAAAATTGCTATATGTGCACAATAAAAATTTCCCCATCAGAAGTGCAAGGGGTCAGGGAATTCCCTTTCCTAGCCAAGCAAAGCTGTGAACAGATGGCACCTGGAAAATTGGGTCACTCCCACCCTAATACTGTGCTTTTCTAGTGGTCTTAGTAAATGGCACACCAGGAGATTATATCCTGCACCTGGCTTGGAGGGTCCCATGCCCACGAAGCCTCACTCATTGCCAGCACAGCAGTCTGAGATCCAACTGCAAGGCAGCAGCGAGGCTGGGGGAGGGGTGTCCACCATTGCTGAGGCTTGAGTAGGTAAACAAAACCACCAGGAAGCTCGATCTGGGTGGAGCCTACTGCAGCTCAAGGAGGCCTGCCTGCCTCTGTAGAATCCACTTCTCGGGGCAGGGCATAGCTGAACAAAAGGCAGCAGAAACCTCTGCACACTTAAATGTCCCTGTCTGACAGCTTTAAAGAGAGTAGTGGTTCTCCCAGCATGGAGTATGAGATCTGAGAATGGACAGACGGTCTCCTCAAGTGGGTCCCTGACCCCTGAATAGCCTAACTGGGAGGCACCCCCTAGTAGGGGCAGACTGACACCTCACAGGGCTGGGTACCCCTCTGAGACAAAACTTCCAGAGGAACGATCGGGCAGCAACATTTGCTGTTCAGCAATATTTGCTGTTCTGCAGCCTCTGCTGCTGATACCCAGGCAAACAGGGTCTGGAGTGGACCTCCAGCAGACTCGCGGCTGAGGATCCTGACTGTTAGAAGGAAATCTAACAAACAGAAAGGACATCCACACCAAAACCCCATCTGTACATCACCATCATCAAAGACCAAAGGTAGATAAAAGCACAAAGATGGGGGAAAAACACAACAGAAAAACTGAAAATTCTAAAAATCAGAGTGCCTCTCCTCCTCCAAAGGAATGCAGCTCCTCACCAGCAACGGAACAAAGCTGGATGGGGAATGACTTTGACGAGCTGAGAGAAGAAGGCTTCAGATGATCAAATTTCTCCAACCTAAAGGAGGAAGCTCAAACCCATCGCAAAGAAGTTAAAAACCTTAAAAAAAGATTAGATGAATGGCTAACTAGAATAACCAATGCAGAGAAGTCCTTAAAGGACCTGATGGAGCTGAAAACCATGGCAGGAGAACTACGTGACACATGCACAAGCTTCAGTAGTTGATTCAATCAAATGGAAGAAAGGGTATCAGTGATTGAAGATCAAACAAATGAAATGAAGCGAGAAGAGAAGTTTGGAGAAAAAAGAATAAAAAGAAATGCACAAAGCCTCCAAGAAATATGGGACTATGTGAAAAGACCAAATCTACGTCTGATTGGTGTATCTGAAAGTGACGGGGAGAATGGAACTGAGTTGGAAAACACTCTGCAGGGTATTATCCAGGAGAACTTCCCCAACCTAGGAAGGCAGGCTAACATTCAAATTCAGGAAATACAGAGAACGCCACAAAGATACTCCTTGAGAAGAGCAACTCCAAGACACATAATTGTCAGATTCACCAAAGTTGAAATGAAGGAAAAAATGTTAAGGGTAGCCATTGAGAAAGGGCGGGTTACCCACAAAGGGAAGCCCATCAGACTAACAGCGGATCTCTCGGCAGAAACTCTACAAGCCAGAAGAGAGTGGTGGCCAATATTCAACATTCTTAAAGAAAAGAATTTTCAACCCAGAATTTCATATCCAGCCAAACTAAGCTTCATAAGTGAAGGAGAAATAAAATCCTTTACATACAAGCAAATGCTGAGAGATTTTGTCACTACCAGGCCTGCCCTAAAAGAGCTCCTGAAGGAAGCACTAAACATGGAAAGGAACAACCGGTACCAGCCACTGCAAAAACATCAGATTGTAAAGACCATCAAGGCTCGGAAGAAACTGCATCAACTAACGAGCAAAATAACCAGCTAACATCATAATGACAGGATCAAATTCAAGCATAACAATATTAACCTTAAATGTAAATGGGTTAAACGCTCCAATTAAAAGACACAGACTGGGAAACTGGATAAAGAGTCAAGACCCATCAGTGTGCTGTATTGAGGAAACCCATCTCATGTGCAGAGACGCACATAGGCTCAAAATAAAGGGAAGGAGGAAGATCTATCAAGCAAATGGAAAACAAAAAAAGGCAGGGGTTGCAATCCTAATCTCTGATAAAACAGACTTTAAACCAACAAAGATTAAAAGAGACAAAGAAGGCCATTACATAATGGTAAAGGGATCAATTCAATAAGAAGAGCTAACTATCCTAAATATATATGCACCCAATACAGGAGCACCCAGACTCATCAAGCAAGTCCTTAGAGACCTATAAAGAGACTTAGACTCCCACACAACAATAATGGGAGACTTTAACACCCCACTGTCAACATTAGACAGATCAACGAGACAGAAAGTTAACAAGGATATCCAGGAATTGAACTCAGCTCTGCACCAAGCGGACCTAATAGACATCTACAGAACTCTCCACCCCTAATCAACAGAATATACATTCTTCTCAGCACCACACCACACTTATTCCAAAATTGACCACATAGTTGGAAGTAAAGCACTCCTCAGCAGATGTAAAAGAACAGAAATTACAACAAATTGTCTCTCAGACCACAGCGCAATCAAACTAGAACTCAGGATTAAGAAACTCACTCAAAACCACTCAACTACATGGACACTGAACAACCTGCTCCTGAATGACTACTGGGTACCTAAAGAAATGAAGGCAGAAATAAAGATGTTCTTTGAAACCAATGAGAACAAAGACACAACATACCAGAATCTCTGGGACACATTTAATGCAGTGTGTAGAGGGAAATTTATAGCACTAAATACCCACAAGAGAAAGCAGGAAAGATCTAAAATTGACACCCTAACATCACAATTGAAAGAACTAGAGAAGCAAGAACAAACACATTCAAAAGCTAGCAGAAGGCAAGAAATAACTAAGATCAGAGCAGAACTGAAGGAAATAGAGACACAAAAAACCCTTCAAAAAATCAATGAATCCAGGAGCTAGTTTTTTGAAGATCAACAAAATTGATAGACCATTAGGAAGACTAATAAAGAAGAAAAGAGAGAAAACTCAAATAGATACAATAAAAAATGATAAAGGGGATATCACAACCGATCCCACAGAAATACAAATTACCATCAGAGCATACTATAAACACCTCTACACAAGTAAATTAGAAAATCTAGAAGAAATGGATAAATTTCTCCACACATACACCCTCCCAAGACTAAACCAGGAAGAAGTTGAATCTCTGAATAGACCAATAACAGGCTCTGAAATTGAGGCAATAATTAACAGCTTACCAACCAAAAAAAGTCCAGGACCAGGTGGATTCACAGCCAAATTCTATCAGAGGTACAAGGAGGAGCTGGTACCATTCCTTCTGAAATTATTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAACTCATTTTATGAGGCCAGCATCATCCTGATAACAAAGCCTGGCAGAGACACAACAAAAAACGAGAATTTTAGACCAATATCCCTGATGAACATCAATGCAAGAATCCTCAATAAATTACGGCAAACTGAATCCAGCAGCACATAAAAAGCTTATCCACCACGATCAAGTGGGCATCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAGTAAATGTAATCCAGCATATAAACAGAACCAAGACAAAAACCACATGATTATCTCAATAGATGCAGAAAAGGCCTTTTAAAAAATTCAACAGCACTTCAGTCTAAAAACACTCAATAAATTAGGTATTGATGGGACGTATCTAAAAATAATAAGAGCTATTTATGACAAACCCACAGCCAGTATCATACTGAATGGGCAAAAACTGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGGATGCCCTCTCTCACCACTCCTATTCAACATAGTGTTGGAGGTTCTGGCCAAGGCAATCAGGCAGGGGAAAGAAATAAAAGGTATTCAGTTAGAAAAAGAGGAACTCAAATTGTCCCTGTTTGCAGATGACATGACTGTATATCTAGAAAACCCCATCATCTCAGCCCAAAATCTCCTTAAGCTGATAAGCAACTTCAGCAATGTCTCGGGATACAAAATCAATGTGCAAAAATCACAAACATTCCTCTACACCAATAACAGACAAACAGAGAGCCAAATCATGAGTGAACTTCCATTCACAATTGCTTCAAAGAGAATAAAATACCTAGGAATCCAACTTACAAGGGACGTGAAGGACCTCTTCAAGGAGAACTACAAACAACTGCTCAACAAAATAAAAGAGGCTACAAACAAATGGAAGAACATTCCATGCTCATGGGTAGGAAAAATCAATATCATGAAAATGGCCATACTGCCCAAGGTAATTTATAGATTCAATGCCATCCCCATCAAGCACCAATGACTTTCTTCACAGAATTGGAAAAAACTACTTTAAAGTTCATATGGAACCAAAAAAGAGCCCGCATTGTCAAGTCAATCCTAAGCCAAAAGAACAAAGCTGGAGGCATCAGGCTACCTGACTTCAAACTATTCTACAAGGCTGCATTAACCAAAACAGCTTGGTACTGGTACCAAAACAGAGATATAGACCAATGGAACAAAACAGAGCCCTCAGAAATAATACCACAGATCTACAACTATCTGATCTTTGACAAACCTGACAAAAACAAGAAATGGGGAAAGGATTCCCTATTCAACAAATGTTGCTGGGAAAACTGGCTAGCCACATGTAGAAAGCTGAAACTGGATCCCTTCCTTACACCTTATACAAAAATTAATTCAAGATGGATCAAAGACTTAAATGTTAGACCTAAAACCATAAAAATTCTAGAAGAAAACCTAGGCAATACCATTCAGGACATAGGCATGGGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAACAAAAGCCAAAATTGACAAATGGGACCTAATAAAACTAAAGAGCTTCTGCAAAGCAAAAGAAACTACCATCAGAGTGAATAGGCATCCTACAGAATGGGAGAAAAATTTTGCTATCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACCAAACAACCCCATCAACAAGTGGGCAAAGGATACGAACAGACACTTCTCAAAAGGACATTTATGCAGCCAAAAAACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATTTCACACCAGTTAGAATGGCAATCATTAAAAAGTCAGGAAACAACAGGTTCTGGAGAGGATGTGGAGAAATAGGAGCACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATTATGAAAGACAGTGTGGTGATTCCTCAGGGATCTAGAACTAGAAATACCATTTGACCCAGCCATCCCATTACTGGGTATATACCCTAAGGATTATAAGTCATGCTGCTTTAAAGACACATGCACACGTATGTTTATTGTGGCACTATTCACAATAGCAAAGACTTGGAACCAAGCCAAATGTGCAACAATGATAGACTGGATTAAGAAAATGTGGCACATAGACACCATGGAATCTATGCAGCCATAAAAAAGGATGAGTTCATGTTCTTTGTAGGGACATGGATGAAGCTAGAAACCATCGTTCTCAGCATACTATCACAAGGACAAAAAAACCAAACACTGCATATTCTCATTCATAGGTGGGAATTGAACAATGAGAACACTTGAACACAGGAAGGGGAACATTACACACTGGGGTCTGTTGTGTGGTGGGGGGAGGGGGAAGGGATAGCATTGGGAGATATACCTAATGTATATGACGAGTTATTGGGTGCAGTACACCAACCTGGCACATGTATACATATGTGACAAACCTGCACTTTGTGCACATATACCCTAGAACTTAAAGTGTAATAAAAAATGTATATATGTATAAAAATTTCCCTTCAAAATGGACATGATGTCTTATTCATATTTATAGTTATAATTTCAATCAGGGCTTGGTGTAAGATACATATATCTTATGACATGTTTATATTTAATATTCTTTTCTCTTTTAG
Seq C2 exon
GTCTGCAATAATTTCCCTCTACTCATTGATTGTTTCCCAGGAACTCACAACAAAGTGCTTAAAAATGTTGCTCTTACACGAAGTTACATTAGGGAGAAAGTAAAAGAACACCAAGCATCACTGGATGTTAACAATCCTCGGGACTTTATCGATTGCTTCCTGATCAAAATGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138115-CYP2C8:NM_000770:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)