MmuINT0044951 @ mm9
Intron Retention
Gene
ENSMUSG00000060613 | Cyp2c70
Description
cytochrome P450, family 2, subfamily c, polypeptide 70 [Source:MGI Symbol;Acc:MGI:2385878]
Coordinates
chr19:40239818-40242113:-
Coord C1 exon
chr19:40241953-40242113
Coord A exon
chr19:40239992-40241952
Coord C2 exon
chr19:40239818-40239991
Length
1961 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
TGCATTTGTTTCTCTTCTAGCTG
3' ss Score
10.03
Exon sequences
Seq C1 exon
GCTCCCCCTGTGATCCTAGCTTCCTTCTGGCCTGTGTTCCCTGCAATGTGATCTCTACTGTCATTTTCCAGCATCGATTTGACTACAATGATCAGACATTCCAAGACTTCATGGAGAATTTTCATAGAAAAATAGAAATTTTAGCATCTCCTTGGTCCCAG
Seq A exon
GTTTGGTTCGGTTCTATTTATATGTGAAAATATTATGTACCCTAGTCTGTACTGTTATCCTCCAGGAGAAAGTATTGGATCTCTTGGAACTGGAGTTATAGGTGGTGGTGAGCTACATGATCTGAGGGGCTTAGAACTGAACTTGGAGCCTCTGTAACAGCAGCACATGTTCTTAACTTCTGAACCATTTCTCTAGATCCAATATTAGTTTACTAGTTTTATTAGTTTTTTTTTTTAAAGAGGCCACTAAATTGCTGGGTGTGGTGTTATAGCCTGAGCTGCATAGAAAGGTTCAGGTCATCTTGGGCTACCCTGTAATAAACACATCTAGACAGACAGACAGACAGACTGAACAAAACAAGAAAACTGCAAAGAAAATGCCAACCAAAAATATATCAAGATTGTTTAGATGGCTTTAGGTTTTCTTTTGTTCACAAAATTTCTAGGCTATTTATTGTTCATTCTTATTTTTTTTTTTTTTTACAATTCCTAACCAATTGTGAACTATCTGTTTCATTTAAAACTTAAGGGAAACAGATGATATGAAATAGAATAGAAAAAATTATAGTATCAGAGGGCTTCAATTTTATCAAGCATTTCTTTTGGAAAACAACAGCAGCAACAACAACAATGACACTTTTTTTTTTCTGATTTTGCCCAATATTTGGGGATAGAGATTTAGGCTACAGGATGCATTTCTTACTATGGTGCATGGTCAGAAGATGTTTCTAACCTATGCTCTACATCCATGAACAACACCTGTTTCTATAGATTATAAGGGAAAATATGTTCCACAAAACAAGGGCAATGGAGAGCAAATAGTTTACCCGCTTCAGTATTGGAGTAAGAGGTTGAATCCTGGTCATATGAAGCACATTATCTAAAGTAGCGCTGGCTTGTTTTATTTCATTAAAAGGGTAAAGTAATATTTCATAGTAAGATGGCACTTGAGTATAGAATGTCCCCATACATACACACACACACACACACACACACACACATACACACACACACATTTGAGATTATATTTTTTAAATGACTTCCATGTTTTTTTAAAACATTTATTTAGTATTATACATAAGTTCACTGTAGCTGACTTCAGACACACCAGCAGAGGGTGTCAGATCTCATTATGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAATTCAGGACCTTTGGAAGAGCAGTCAGTGCCCTTTCTTGCTGAGCCATCTCACCAGCCCCACATTTGAGATTATAATCACATAATTTTTCTTTCCCTTTTTGCCATCCAGCTCCTCCCATGTAATTGATCCTCCCTTGCTGTCATTCAAATTAAAGTTTTTTCTTTAAATTTTGTTACACATATACAAAGATACACATCAATGTATTAGTAAAACTTGCCTAGTTTGTTAAGTGCTGCCTTTATGTATATATTTAAGGGCTGATAACTTTATAGTAGGTAACCAATTAGGAGATATCCCCCAAGCAGACTTATACTCCCTTTTTCTGCACTCTTTACTCATATAGGGGTGGCACCTCATGAGATTTCTACTTTGACTTTAGCATGTCTATTGGTGTTGCCATTTTTTCAGGTGACTGGTGAAATATGCACAGGGTAAACTGGGATGCAGGCTGCTTCTATCTCTGCTATCACTAGTTTGCTGTCTCAGAATTTTTGACTTGTCATTCTGCATCTCAGTGTTCTCAACAGGACAGAGGGGAAGGTAGCATTAGCCCACACATTACTCTGGAAAAATCTGTTGTCAGGAATGCAAATATGATTTGGAGTTGCTGCATAGGCTGTGCACATGGTAGATCTGACCATTTGACCCATGCTGTGCCTGTTTCTCCAAATGCCAGGCATGTAGGAGCACAGGGAGGCATGTGGAACTCACCGTTATGAAGTGTTGGACAGCTGGCTATGGCCTGGAAGGTTTGCTGATTCTATGAATGCATTTGTTTCTCTTCTAG
Seq C2 exon
CTGTGCAGTGCCTACCCTATTTTATACTATCTCCCTGGAATCCATAACAGATTCTTAAAAGATGTGACTCAACAGAAAAAGTTCATCTTGGAGGAAATAAACAGGCATCAAAAATCTCTGGACCTCAGTAACCCTCAGGACTTTATTGACTACTTCTTGATTAAAATGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060613-Cyp2c70:NM_145499:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCCCTGTGATCCTAGC
R:
AGAAGTAGTCAATAAAGTCCTGAGGG
Band lengths:
318-2279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: