BtaINT0046219 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012972 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr6:18515633-18517508:-
Coord C1 exon
chr6:18517347-18517508
Coord A exon
chr6:18515801-18517346
Coord C2 exon
chr6:18515633-18515800
Length
1546 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
GTGGTTTTGTTCTGTTTTAGTGC
3' ss Score
10.02
Exon sequences
Seq C1 exon
AAAAGATTCATGAAGAAATTGCAAGGGTCATTGGTGCTGACCGCGCCCCCTCCCTCACTGACAAGGCGCAGATGCCCTACACAGAAGCCACCATCATGGAGGTGCAGAGGCTGAGCACTGTGGTGCCGCTCTCCATCCCTCACATGACCTCAGAGAAAACAG
Seq A exon
GCAAGTCCAGGGCCTTCCTCCTCGGAATGCCCTTGAGGGGAACCCAGCCCCTTCACCCAGAGGACCTGAGGTGAGGGTGCAGCCGGGGTTTGGCATGGTCATGGATAATCAAATGTCCAGGGGATGCTTCAGCCTTGCTGTCCCTGTTTGCTGTACTGGCTGGCATTCCAGCACTGGCTGACTGGTAAACATCTCTCTTGGCTTCAGAGCATGCTCATGTACACTGGTCAGGCAAATTCTTCCCTTTAATGTGGCTGTATTGGCAGATACAATAGTTAACAAAGGTCCCTCTCAGTCCTCCTGTTCTTGGAGGTCCGAAGAGCTAGCCTAAATTTGGAATTAAGGAGTTCAACTGGGAATTATCCTGCATCGTTTTTAACAATTCTGCAACTGAAGCACAAATGGTGAAGAATTAGAAGAGCCCATCTGATTCTGAGGGCACATGTTTCAGCCTCTCATCTACAGTGACATACAGGCTCTCAGACTGTAAATGTCCTTCATAGCCAGGAGTTGTCCTCTGGAGACAGCCTGTGATGAAATGGCCTTGCATCTACTTATAAGACAATTGTAGGAGGCAATCACTTATAAATGACATTGGATCACTCAACAGTTGGGTGGAAATTAGATACGAATGTGATTAGATATGTGCGGCATCTTTGGGGCATTGTTTAAAGTACATATGATCTTGACAGCTGGTGAGAGCCAGTGCTGATGTCCTGTTATATCCCTTTAGTTTACCTTCTTCATTGCATTGTTGTGTGGACATAAAAGACTGTGAGCTGTAAATTATATATAAGAATTACTGTTGTCTGAAGTGAAGAGAAGTGAAAGTCGCTCAAGTCATGTCTGACTCTTTGCGACTCTGTGGACTGTAGCCTGCCAGGCTCCTCTGTCCATGGAATTCTCCAGACAAGAATGGAGTGGGTAGCTATTCCCTTCTCCAGGGGATCTTCCCGACCCAGGATCAAACACAGGTCTCCTGCATTGTGGGCAGATTCTTTACCATCTGAGTTTAGTTGCTAAGTTATGTTTGACTCTTTGTGACTCCATGGAGTGTGGCTGCCAGGCTCCTCTGTCCATGGGATTTTCCAGTCAAGAATACAGGAGTGGGTTGCCATGCCCTCTTCCAGGGGATCTTCCCAACCCAGGGATCAAACCTGTGTCTCGTGCATTGGCAGGTGGGTTCTTTACCACTGAGCCACCAGGGAGGAATTTATAATTTTTTGGAACAGTTTACTTGACATGCCACATGATTTCTATTTTAATGTTTCTCTTAATTATAATTTTTAATGGTTTGATTGGGTTTATTAACTCAGCATGCATCAGAGCAGCTCCTGTGCTCTGTCTTAGGCTGAGTCTAGGGATCGTGTGGAGACGATGACAGTTAATGAGGTCTTTTCCCTGCCCTCAAAGTACCTGAAAGTTTACTCTCAGCAGCTTAAGAACCTAGATAAATAACTAGCTCGGTTTTTTCAAACAGTGATGTTTACTGAGAGCTATTAGTAAAAGGCATGTTGAATGATTCTGTGGTTTTGTTCTGTTTTAG
Seq C2 exon
TGCTCCAAGGTTTTACCATTCCTAAAGGCACAATAATATTACCCAACCTATGGTCAGTACACAGAGACCCAGCCATCTGGGAGAAACCAAATGATTTCTACCCTGATCGATTTCTGGATGATCAAGGACAACTTATTAAAAAGGAAACGTTTATTCCTTTTGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012972:ENSBTAT00000017246:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGATTCATGAAGAAATTGCAAGGG
R:
TCCCAAAAGGAATAAACGTTTCCT
Band lengths:
326-1872
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]