RnoINT0044431 @ rn6
Intron Retention
Gene
ENSRNOG00000011053 | Cyp2u1
Description
cytochrome P450, family 2, subfamily u, polypeptide 1 [Source:RGD Symbol;Acc:1309433]
Coordinates
chr2:236418753-236420765:-
Coord C1 exon
chr2:236420604-236420765
Coord A exon
chr2:236418921-236420603
Coord C2 exon
chr2:236418753-236418920
Length
1683 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TTCTTGTCTGTTGTCCACAGTCC
3' ss Score
10.31
Exon sequences
Seq C1 exon
AAAAGGTTCATGAAGAAATTGAAAGGGTCATTGGCCGTGACCGTGCACCTTCCCTCACAGACAAGGCCCAGATGCCATACACAGAAGCCACCATCATGGAGGTACAGCGGTTATCCATGGTGGTACCACTTGCCATTCCTCACATGACCTCGGAGAAAACAG
Seq A exon
GCAAGTCCAGAGCCTGCCTTCTTTGCAGACCCCTGAGGGAATCCTCTGAGTGCAGGGACGCATGTGGCTACATGAGAAAGGTCCAGGACTGTTTGTACCCTGTCATTGGTTCAAGGACTGTAGTCCTTACCAGCCGCCCTCTGGCCTCCAGTCCTTCAAGATGCTATCCCGCAGAAGAAACTCAAGTTGGCAGTGGCCTGTCTAGTCTTCATGTGGATGTTGGAAGAGTCAGACTAAATGTGGACTCGAGTATGTTTGCTAGAGATGAGTCCCCTTTGATTCCTAAAATTCTGCAAGCAGAATGTAATTATTTAAAAACTGGAATGCTCCAGCCTCACCCTAGCCTAGGGTCACCAACTTTAACCTGTCAGCTGCTGAGAACTGTGTCAGCATGTGGTGAGCCCGGAGTGTCTCTAAAGCGCCCCTTTAAAAGGCTGGGTGCTTCACAGCTGTAACCCTCGCAGGTGGGAAAGTGAAGCAGGAGAACTTTGGGGGTAACTGTTTCAGAGAGAGAAAGAGGTAGAGGTTGGTGGGAAGGGTAGCGTTTAAGGCTTATAGAGATGGCTTAGAATACAAATCAGCTCCACCGTGAGGAGCCCAGCACCTGGGGATATTGGTTAGCTTGTCAGCTGATGATTGTGGGAGCAGAGTTCCCTGCAGGCCTTTTCTCTTGATTTGCTGTCCCCTTCACACTGTTTGGACAGAAACACCTGTAGGTGACTCCCTTCTGTGCTGGGCATCGACTTGACACACACTAAAGTCATCTGAGAGGAGGGAACCTGAATTAGGGAAACGCCTCTGAGAGATCAGGCTGTGGGCAAGCCTGCAGGGCAGTGGTTCTCAGGCCTCCCAACGCTGGGACCTTTTACTACAGTTCCTCGTATTGTGGTGACGCCAGCCGTAACATTATCTTAGTTGCCACTTCAGAACCATAATTTTTGTACTACTATACATAATGATAAATAATGACAACTCGTGATTTCTCTGATGGTCTTAGGTGACCCCTGTGAAAGGGTCATTTGCTCCCAAAGGGGTCTCGACCCACAGGTTGAGAAACACTGCCACAGAACATTTTCTTAACCAGTGATTGACACAGAAGGACCCAGCCCATTGTGGGTGGTGCCATCCCTGGGCTGGTGGTTCTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAACAGCACTCCTCCATGGCCTCCGCATCAGCCCCTGCCTCTCTTGAGTTCCTGTTCTGACTTCCTTCCGTGATGAGGTGTAAGCCAAATCAACCTGTCCCTCCTCGGGTTGGCCATGCTGTGTCATCACAGCTGTAGCAGTGCTCGCTAATATGCATTCTGTGTCAATTGTAGGAATGTGTGAATCTCGGGGAACGGTAACTTAGAGCTCATTCCCGGTCTAGTGCTCCCTTGTAAGTTTTAATGGCCTGACCTGGCTCACTGATTTGGCACCTACTCCCGTTCCTGCTGTCTCAGGTCGGGTCTGGGCTGGTGCAGAGAAAACGTGATACTTGACAGACTCTTATCCCTCCCCTCAGGAACCTCAGGGTTGAGTCTCTGCCAGCTTCTGTGTTCAGTAGGAAAATGTTCCCTCCCTGGACAAGGTCATGTTTGAAGGGAACTATCAGCGAAAGTGTGGTGCTGACTCTGTTCTTGTCTGTTGTCCACAG
Seq C2 exon
TCCTCCAAGGGTACAGTATTCCTAAAGGCACAGTGGTCCTACCCAATTTGTGGTCCATACACAGAGACCCAGTCATTTGGGAGAAGCCAGACGACTTCTGTCCTCATCGATTTCTGGATGACCAGGGACAACTTTTGAAAAGAGAAACGTTTATCCCTTTTGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011053:ENSRNOT00000055570:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTCATGAAGAAATTGAAAGGGT
R:
ATCCCAAAAGGGATAAACGTTTCTCT
Band lengths:
326-2009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]