HsaINT0044333 @ hg38
Intron Retention
Gene
ENSG00000155016 | CYP2U1
Description
cytochrome P450 family 2 subfamily U member 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr4:107947376-107949517:+
Coord C1 exon
chr4:107947376-107947537
Coord A exon
chr4:107947538-107949349
Coord C2 exon
chr4:107949350-107949517
Length
1812 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
3' ss Seq
TATGTTTCCTTTTGTTTTAGTGC
3' ss Score
10.32
Exon sequences
Seq C1 exon
AAAAGGTTCATGAAGAAATTGAAAGAGTCATTGGCGCCAACCGAGCTCCTTCCCTCACAGACAAGGCCCAGATGCCCTACACAGAAGCCACCATCATGGAAGTGCAGAGGCTAACTGTGGTGGTGCCGCTTGCCATTCCTCATATGACCTCAGAGAACACAG
Seq A exon
GCAAGTCCAGGGTCTTCCTCTTTGAATGCCCTTGACGGAAGCAGGGCCCTCTAATCCAGGGTAGTTGAGGTGAGGGGTGTGGTGACTGTTGTCTAGCTTGATCCTTCTGAAGATTTAGCATTGTGTCATATGTAATAAAATGTCTAGGGAATGTTCAGCCCTCCGCTGTGCATCACTGGTTGTACTAGAATTCTACTACTGCTTAGTTTTACTAGTAGTTCTGTAGCCTTCAGAGCATACACAATTATACTGGCAAAACAAATAATGTCAAAATTTAAATTGGCTATGTTGGCAGAAAAAGCTCCAGAATTGACAAAGGCACCTCTCCCTCCTTTTCATGGAGGTCAGAAGAGCTCATCTAAATGTGGATTAAGGATTTTGCCTGAAAATTATCTTACTTCAACTTTTAAAATTCTGCAGCTGAAGCATAAATATGAAATAATTAGAAGGCCGGGTGTGGTGGCCTACACCTGTAATCCCAGAATTTTGGGAGGACGAGGCAGGTGGATCACTTGAGGTCATGAGTTCGAGACCAGCCTGGACAAGATGGTGAAACCCCATCCCTACTAAAAATACAGAAATTAGCCAGGCATGGTGGTGCACAACTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGGACCTGGGAGGTTGCAGTGAGCTGAGATTGCACCACTGCACTCTAGCCTGGGTGATGGAGCAAGCCTCTGTCTCAAAAAAAAAAAAAAAAAAAGGGCTGGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCCAGGAGGATGGATCACTTGAGGCCAGGAGTTCGAGACCAGCCTAGCCAACATGGCGAAAACCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCACACTTCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAAGAATCACTTGAACCCGGGAGGCAGAGGTTGCGGTGAGCCAAGATTGCACCACTGCACTTCTGCACTTCAGCCTGGGTGACAGAGTGAGACAGCCTGTCTCAATAATAATAATAATAATCATCATCATCATCATCATAGTTAGAAGAGCCCATCTTTTTCTAAAGTCACCTGTTTCAGCCTCTCATCTACAGTGAACTCTGTCTATTTGGTCATGTCCAGACTCTCTTTAAACATCCCTATTAACAAAGAATTTACCTCTGGAGTCAGCCCATAGTATAATGGGCTTGATCTAGTTTTAAGACAGTTATAGCATGCCGTTGCTTATACATGACATTGGATCACTTAACGGGTTTTTTTTGGTACAAGTTAGATAGACTGTTTATAGTATCTTTTGGGCATTGTTTAAAGCGCATATTGACTTGTCAGCTGGTAAGAGCCAGGGTTGGCTACCCTGTATATTTCTTTATCTTAGTTTACCTCCTCATTACATTGTTATATGGACATAAATGACCCTGTAAACTAAGTTTTATACATATTGGGAATTTTAATTTTTAGGGAACGTTTACTTGAAATCCCCTATTGTTTCTGTTTTAGTGTTTTCTCTTCATTGTAATGTTTTTATGGTTTTATTTATTAATTCAGCATTCATTGGAGCACTGCCTGCTCCCTGTCTCAGGTGGGTCCTGGAATGGTGCGGGGAGAGGGATGCCAGTTGGTAAGATCTTATCCCTGCCCTCAAGTACCTCACAGTTTGGTCTCAGCCAATTAAAGTGATAGGTATATAACTACATTTTTTTTTCAGATAATGATGTTCAGGGAGAACTACTAGTAAAAGCATACTGAATAACACCCATATGTTTCCTTTTGTTTTAG
Seq C2 exon
TGCTCCAAGGGTATACCATTCCTAAAGGCACATTGATCTTACCCAACCTGTGGTCAGTACATAGAGACCCAGCCATTTGGGAGAAACCGGAGGATTTCTACCCTAATCGATTTCTGGATGACCAAGGACAACTAATTAAAAAAGAAACCTTTATTCCTTTTGGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155016:ENST00000332884:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.2=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGAAATTGAAAGAGTCATTGGC
R:
TCCCAAAAGGAATAAAGGTTTCTTT
Band lengths:
318-2130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development