DreINT0054291 @ danRer10
Intron Retention
Gene
ENSDARG00000026548 | cyp2u1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-070730-1]
Coordinates
chr1:49282247-49283193:-
Coord C1 exon
chr1:49283032-49283193
Coord A exon
chr1:49282415-49283031
Coord C2 exon
chr1:49282247-49282414
Length
617 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TAATCTGTGTCTCTTTGCAGAGT
3' ss Score
10.81
Exon sequences
Seq C1 exon
AGAAGGTTCAGAAGGAGATTGATGCAGTGGTGGGATCTGAGAGAGTGCCCTCTCTGACCGATAAGAGCAGTTTGCCGTACACTGAAGCCACTATTATGGAGGTGATAAGAATGACTGTTGTGGTTCCTCTGTCCATACCACATATGGCCTCAGAAACCACCG
Seq A exon
GTGAGCTTTGGCTTTTTTAGAAATATTCAGGAGAACATATAGGAGATATAATATGATGGAACTTCTTAAAATGATAGTTCACCCAAAAATGAAAATTCATGCGCAGGAACACCACTTATGGGACGGTTTTCTTCAGGCTCAGATAGCGATCATCAGTATGATGGTTGATTTAGAAATAAAAAGCTGCAGATAAGCCAGAAAAATATGAATAATTGCAATAACAGTTTTATTACAGACGTACAGGATTTATTTACAATATTAAGTGCTTGCATTCGAACTGCAGTCTGTCAAAATATACTGAAATGTGAATTTGTTTAAGATTCCCCCACGAACATTATTTGATATAGTTTCCCACAGAAGGTATTTTGATATTGCAGTTGATTTTTGATGTTTATCTACTGTTAATTATTAACAAATTAAAGTAAACCAGGTCAACTTGAACTTCACCATAATACACATACAGTCTGCACAAAGCACATAATCATCGGACTTTAGAATGAATCAGTATTTCTTTTTTTATACCACATCCAAAGGGTGCACAGATATTTTCACTATACAAATATTTTGAGGGCACTTTAAAAAAAAGAACGGATAAATTAATCTGTGTCTCTTTGCAG
Seq C2 exon
AGTTCAGAGGGTTCACCATCCCTAAAGGAACGGTTATCATCCCAAACCTCTGGTCAGTTCACAGGGATCCCACAGTGTGGGAAAATCCTGATGACTTCAATCCATCACGATTTCTAGATGACCAGGGAAAGATTCTCAGGAAAGACTGCTTTATTCCATTTGGATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026548:ENSDART00000048281:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
NA
C2:
PF0006717=p450=FE(12.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTTCAGAAGGAGATTGATGC
R:
TCCAAATGGAATAAAGCAGTCTTTCC
Band lengths:
326-943
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]