BtaINT0046277 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013481 | CYP4A22
Description
Bos taurus cytochrome P450, family 4, subfamily A, polypeptide 22 (CYP4A22), mRNA. [Source:RefSeq mRNA;Acc:NM_001098990]
Coordinates
chr3:99925886-99926048:+
Coord C1 exon
chr3:99925886-99925901
Coord A exon
chr3:99925902-99925985
Coord C2 exon
chr3:99925986-99926048
Length
84 bp
Sequences
Splice sites
5' ss Seq
CCTGTCCCA
5' ss Score
-18.6
3' ss Seq
TCTTTTATGAAATGGACCAGATG
3' ss Score
1.89
Exon sequences
Seq C1 exon
GAGATGGAAGAGCCCT
Seq A exon
GTCCCACCTAGCTAGAGAGAATCCCTGCTTGTCCTGTCCTGCCTGCTCTCAGATGGGCTTCCTTTCTTTTATGAAATGGACCAG
Seq C2 exon
ATGCGCTACACGACCATGTGCATCAAGGAGGCAATGAGACTTTATCCACCAGTACCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013481:ENSBTAT00000017936:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(1.1=100)
A:
NA
C2:
PF0006717=p450=FE(4.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]