BtaINT0046888 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25051251-25055075:-
Coord C1 exon
chr2:25054933-25055075
Coord A exon
chr2:25051361-25054932
Coord C2 exon
chr2:25051251-25051360
Length
3572 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
3' ss Seq
ATATTTTGTCCCAACTTCAGGCA
3' ss Score
7.22
Exon sequences
Seq C1 exon
ATACACCGCCACTGCTCTTTGAGGTGTCCTCGCTGGAGAATGCTTTTCAGATTGGAGGCCATCCTTGGCACTACATCATTACACCTAATAAGAAGAAACAGAAAGGAGTTTTCCATATTTGTGCCTTAAAGGACAATTCCTTG
Seq A exon
GTAAATCATGGTGGTCAGGCTTTAGTAGTAAATTAATATCAGAAATTCTTTATTCTTGTGGCTCAGAGGGTAAAGCATCAGCCTGCAATGCGGAAGACCCCGGTTCGATCCCTGGGCCAGGAAGATCCCCTGGAGAAGGAAATGGCACCCCACTCCAGTACTCTTACCTGGAAAATCCCATGGATGGAGAAGCCTGTAGGCTACAGTCTATGGGGTTGCAAAGAGTCAGACATGACTGAGTGACTTCACTTTTCACTTTCTCTAATTGGTCCACATTCCCAGGAATTACTTTTCAATTTGTATCAGTAATTTGTAGACAGTGTAAAGTACGGGAGAACACAAAGAATATAGCAAACACTTGTGTGTACTACCCAGAATTTAAAACATTATTAACATTCGAAAATTTTCAGGGCACCAAAGATGTATTAGTTTTTCTTCTTACCATCTCCTTGACCTCATGTAAAGCATCTCAGAAGCTCCATAGTGGGAATCATTGGTGGATTGTGTTCAGGCTGCCCCTGAAATTGCTGGTGGAATGTGTTGTTGGTTCTGCTTCTTCACAGTTTGTTGCTCTTGGTTTTTCCAAGCAGAATTAGGTAGTATTTTGTTGGTCACAGTATAAGCATTGAAACACCAAGTTTTCAAGGATATTTTAAAGTTATATATGGCAGAATGGGAAGAAAGGATGTATAGCAAGACAATAGAAATTTTTACCCTTTGAATTAATTTCTTTATTTTCTTTTTAGAAATGATTTAGGCATTGATTTATCATTTAGTAAACATTATTGAGGACCTACTATATGCCAGACTTGGCTGGAGACAGTCCCTTCTCACAAGTTCAAAACAAAGCCGATACGTAGATTAAATAAAATGCAGTCCATTCAGTACAGTGGTTGAGATGAGTGCAGAAGAAGGAGTGCACAGAGGAGGGGGGTTTATATTGTTTATATATCCTTGTTTTATATTGTTGATTTACTTTAGTTCTGGAACCTCTTGATACATCAAATTAACTTTTTGTGAGACAGACTCAGCTTATTCCACACCCTTCTCTTCCAGAATCTTCCTCAGTCAGTCTCTGTTGGACCCAGTGGCTTTGAGAGTGACCAGTCGGTCACCTTTCACCACCCTAAAGATTGGCACAGTCTTGGGTCTGTTTACCTACTTCCCTATAGATCATGGCCACCGGGAAACATCGTGTGTAGTATCTTTGGATTTTTTTTGCAGAAGCATTCTTCCCTTTGGTTTTCTCATCAGCCTGTCACGTGTGACACCTCCTGTTTGGCTCAGCCCAGTGACATCCACTTTTCCAGTGGATTCTGGGGACTGTTTACCACGAGTTTGTGGTTTGGTTATTCACCTCCCAGCAGTGGACTGCTTTAGCCACCAAGGACTCTGTCACATTGCTTTTTCGTTGAAATTTCTATCCAGTCAAACCCTGCATAGTTCATATTCTTCCCAAATAAGAACTGGTAATATATTCTCTTATGTGTGTGTATAAAATGGCCTTCAATATCTACATCAGGCATGCCTATCTGGTACTCTCTTTGTATAATTACTAATTGTAACATTTAGTCAGATCTGTATTTTAGCATGTTCATAAATAATTGCTGAATCCAGGGGAGTTTTCAGTACTTTGCTGGACAACTTCATTGCAGTGACGTTACCTTAATGATGTGTATGTGCGTTACTTCCGCACCTGTCAGGCAGAAAAGTTGGCAACCCAAAAACATATGTGCAGGGTAACTGAAGAATTCAGAAAATGACCTGTAACTTTCTATTAAACTGAGCCTTAAACTAGCATTCGAGCAAATAATAACTCCAGAAGTTGATAATAATGCTGCCTAGTATTTAACACAAAGAGAGATAATGTTTCTTTCACATGTTGTGTTTAGATATTATAATAAAGAGAATGGTCTCCTAAAGAAAGATATGGGTTATGTGTGCATGTTTATGTGTGTGTTTTATTTTTAAAAAACATTAAAAAGTTTTATGTTACATGAAGGAGCATTTGGAGATAATGCCAAAATGGACACATTAACTTTTTTTTTTTGGCTACATTGCATAACACAGGCAAGATCTTAGTTCCACAACCAGGGGTCAAACTCACACCCCCTGCAGTGAAAGTGACCAAGATGTTTAATTTCATTGACGTTCTTATATGTAAAATGCAATAATACAACCATTTCTCTTAGAAATCATTAGGTTCTTGAAAAATTAAAATACCTGTGCTAATTTGATACATAAAATGTGCTAAATTCCGATTATTAAAAAAACACAGCATACAAAGCGCTTGCGATGTAGCCTTCGCCTGCCTCTCCAGTCTCATGACTGGACACTCTGCTTCTCAGTTTAATTTTGTCTGCTACTCATGTTTTTGCACATGCATGCTATATGGACGAACATATCCGTGCTTTTGATTGTGCTATCTCTTCTTTCAAGCCACTTTCTCATTTTAAGGCAGAGTTCAGCTCCTGAAATTCTGTTTACCTGGTTTGGATGCTTGATAATAACCTGTGTATGGCTTGACTACTGTGTTTTCTCCACGGCCTTACTCTGTTTCAGTCTCCATTCTTGAATATGAGCTTCTGGATAATAGAGATTATGTTCAGTGCGTGTCAGGTATGAACAGCCAGTGTTGTACCTTGAACATGGTGTCCTGTCAGTATATGCTGTGGAATTAATACTTTTATATGTCGAAAGCTTTGAGTATCTAATAAAAAAGAAGGTGTCGTTTCATTTTACATTGGAGAAATTGAATGACTTGGATAAAGCCAGTAAAGTTAATGTATCCATGATGGTATTAGTCCCTAGTGCTCCTGCGTGTAACGTAAAACTTTTGTTACATATGTGATCCATATGGCAGTATCGTTTTCTTTATTTTAATGTTTAAATATACTAGTATGAAATAAGTCTCTCTACTTACCTTAAGTGCTAGGTAGTAGTAGACCATTTCCTTAGCATTAGTTTAATATCTGACTTTCGCAGGGAGGCTGTCCGACCTGTTTCATTGCATGTTTATTTTTGTGCTGTCTACTCTTCTGATTGACAATCTGTTGAGGATAGGAAAGGGAGAAAGTTGAGGGAGACTGCAAGTACATAATTATGACAGTTAAACAAGGGAAAATGCATGTACCTTGAAGGCTAATCTGCTGTTTATTAATAGTAGGTGCAGAACATTATGCAAATGATTTTTCTTCTTTGTGCATCGGTTTCCTCATGCATACGATGAGGATAGCAATATATGCTTCAAGAATTGCTGAGATCAAAAGAAATAACGAGTAGAAAACATGTAATCCAGTGCCAGACACAAATTAGATGCTTGAAATATGGTAACTTAAGTTATTATTTGTGAGGCATGGTGCATGGTACACCTGTGAAATTTCTGTATTTAAATGTTGTGGATTTCTCAAGCTTGAGTATCCTCTAATTTATCCCTAATATACATCCCAGTTCAGCTGGTTAATATTTTCTCTTCCCTTACCTTTAACTTACTGCACTATCACTGATACTGGTTTTGAAAATTATTTTATTTTCCTTTAATTTTTATTTTCAATATTTTGTCCCAACTTCAG
Seq C2 exon
GCAAAAAATGGGATCCAAGAAATGGAATGTTGTTCTTTAGAATCTGATTGGATCTACTTCCACCCTGATGCTTCTGGCAGAATAATACATGTTGGCCCAAATCAGGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683:ENSBTAT00000010105:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]