DreINT0055029 @ danRer10
Intron Retention
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3534351-3537147:-
Coord C1 exon
chr9:3537005-3537147
Coord A exon
chr9:3534461-3537004
Coord C2 exon
chr9:3534351-3534460
Length
2544 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCCT
5' ss Score
0.99
3' ss Seq
TCCAATGATCTGTACATCAGGCA
3' ss Score
3.91
Exon sequences
Seq C1 exon
AGTGTCCCCCAGTCTTGTTTGAGATGACATACTTTGAGAATGGGGTTCAGATTGGAGGACATCCTTGGCACTACATCTACACCCCCAACCACAAGAGACACAGAGGAACCCACCACGTCTGCTCCATCACAGATGGAGCTCTG
Seq A exon
GTGCCTCTTCTTTTTTTTTATTTAAATGTATTTTTATCGAATGTGCAAAAACGTATCGGAAAATTATATTGAATAATAAGATAATATCCGTCACTCATATTGTTTGAATCCTGACTCTTAAATGAAAAATTATAATAAAAATAATAAATTTAAGGTGGTCTATTCAAATAATGGACTAAGCTGAAGGAAAATCAATGATTGAATTAAGTAAACAAATAAAAAAAAATAAGGACAAGCTTTTAGTCTTAGAGACAGAGATTCCCAGATGATCAAAGGAAGGATCTCAGGTCCCATAAAATAGGAAAGGTTTGTTCTTAATGGCTGTGGTGAAAGTATTGTGGTGACAAGTCATACACGGTGGCAATTCAACGTGTTTTACATAAACAGGAATAAAAGAGACAAGTATAAGAAAATAAAAACAAACAAAAAGCAAAAAAATAAAAATGTGTTAAACAGGTTATAAAAGAATGAAAAAGAAAAGAAATACATAATAGTGTGATCTGTTGGACGTAGCACAGTGCTCATTCAGTAAAGGCACAGCTAAACGGATGTTTCAGTCTTGTTTTGAACTTGCCTAATGTTGGAGCACATCTGTAAACCCAAGTCTGTCTTCCCAGATGCGGAACGCGCGTCAAGCGTGAGGGATTTACATGTTTAGTCGATGGAAACGTGTGAATAGACATCCTGCGGCGCGAATACGCACGAAGGGTGCCGCGCGAATGACACGAATTACACAAATGGCGCGGCGCGAATTAAGAATTTTTGCGCGAATCACTCGAGTTCAAAAATCTGAACTTAGCCACGTTAACCAATCAGAAGCTTGCTCTTGTGGGGCTGTGATTGTGACGTAGAACCTGTTGATGGTGTCCCGGGGGAAATCCTCCAGCCGACACCGACAACAAGTCATCAAACTGGGCTTGGCTCAGTCAGAAGCACCGCTGAAAGCCTCCGACACGGCCCTAAAAGTATCTACGCTGTTTTTCAGCCTTCATAAAGCACATAAACACTGTTATTTTCTTCATAAAATCCATGTTAGCCATTTAGCTACGAAGCTAGAGTCACCGGGCAGACAGAAGCCCTGCCCATCACGTGAATCCGCGTCTGTTCTGAAGTGATTTTGACGCGCAAATGAAGTGGGGTTTAATGCGGGAATCAAGCAAGTAAACTCAAATGCTTACGCGGTAATTAACGTGCAAATAGCGCGATTTATCCTCGCGTTCCACGTCTGGTGTGAACGCAGCATAAGGGTGCTTTCACACCTAGACTTTTGTTTGGGAACCTGTCTCGTTTGCAAAGTTAGCGCGGTTCGTTTGGCATATGTGAAACTTCCAATCGCGCCAAATCAATCGCTTAGAGATCAGTTGAATGAGGTGGTCTCAGCTCGATTGAAACGAACTCTGGAACTGTTCGATTGTAGTAAGAAATCTATATGATCTGAGCCCGGTTATATCACAGTGTTTTATGGATATATCATGTAAAGAGAGAATTATGTGTAGGGCGGGAGGTCATTCCAGACATCCCAAGTCTCCCAGAAGTTTCAGTAGTCTCCCGCAAATGCACAGAGACTCCCGGATGCCCACAAATGAGTGATGATCTCCTGGAAATCGTGCGTCTCTCTCCCGGTCCTCAAATACGTCGCGCACCCTTCTCACCCCTCCCCACCGCATCCCTCCTCGCTCTTCAGACACGTCGTGCGCACCCTGTCAAACACCATCAAACCACCGCCACCCCTAACAGCTGAGCGGGACTCTGCAAAATAAACCCTGACACTCTGACCAATGTGAGGAGAGTTTACTCACACGTGACTTGTTTTAGCTATTTTGGTCCGTTTAGAAACTTTGTCGTGTGAAAGCGAACCGCAACAATGTAACAATGTTAATCCCTGTTTCGCAACAACTGAATCGATTCACAGGTGTGAAAGCACCCTTAGTCTGTCTAACAATGTAAAAACCACAATATTATCAGAATGTGGACATGCAGCACAAGTTATACCAGGACCTTTATGTCATGTCTGTTGTGGTAGATGTAAAATTAAACTAAAGATTCTATTGGGTTTATCTCATTGATGGACCCATGTTGACATTCTGTTATGAATGACAAATGGCTTAGTAAATTTTGTATATCAATATGTCTTCGTACATGATCATCGAAACTAGTGAAAATAGGAAAGTGTTGACATTTTTAAGTGAAATGCTAATGGTCTAATCGGATTCAATGATTTATGCTAAGCTAAGCTAACAGTACTCCTGCCAGACTCTATCCAGCTGAATGTATTAAAAAATGGTAAATATATATTGGCCAGTAGTTTATAGTGTGAATTGTTACTTAAACCAAAGTGTTACCAAGTACTCCATATTTACTTATATAACAACTTCATACACAAGTGCTGTGATAATTTTTTTTTTTTGTGAGAAATCCTTCAATGTTTACAAAATAATCCAAACAACTATCAATGAATAAAACCCTTTGCGAAAAACACTATATGAACATATTTGAATTAAGTGTAAACATCTTATCTATTTGTTCCAATGATCTGTACATCAG
Seq C2 exon
GCAAAGAACGGCGTCCAGGACATGAAATGTGACTCTCTAGAAGTGGACTGGATCTTTTTTCACCCAGATGACTCCGGTCGAATCATTCATGCCGGGCCCAGCACAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909:ENSDART00000145043:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
ENSDART00000139404fB2207
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]