RnoINT0045225 @ rn6
Intron Retention
Gene
ENSRNOG00000009403 | Dcaf17
Description
DDB1 and CUL4 associated factor 17 [Source:RGD Symbol;Acc:1565551]
Coordinates
chr3:57665335-57667360:+
Coord C1 exon
chr3:57665335-57665477
Coord A exon
chr3:57665478-57667250
Coord C2 exon
chr3:57667251-57667360
Length
1773 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATT
5' ss Score
5.99
3' ss Seq
AATATTTTTTTCCACTTCAGGCA
3' ss Score
8.19
Exon sequences
Seq C1 exon
ACTCACCACCTCCACTCTTTGAAGTTTCATCCCTGGAGAATGCATTTCAGATTGGAGGCCATCCTTGGCACTACATCATCACGCCTAATAAGAAGAAACAAAAGGGAGTTTTCCATATTTGTGCCCTTAAAGATAATTCCCTG
Seq A exon
GTAATTCATGAGTATCAACTTTTCAGCAGTAAATTTATATTATAAATTTTTATTCTCTACTCTTCTAGTAGCTCTATAGATCCAGGAATTACCTTTTCACTAATTTGGGAACTGTTTGTATTATTCATTCATTCATTCATTCATTCATTCATTCATTTCTTTATTTAGACAGGGTTTCTGTGTAGTGGTGGCTGGCCTGGAGCTCAGAGATCCTCCTGCTTTGCTCCCCAGTGCTGGGATTAGAGGCATGTGCCACCACACCCAGCAGTTGTAAACAAGTTAAAATACAGAGAATATAGGAAATAGTGTTTGTCACCCAGAATCTTAAAACAACTGTTTGAAAGGTCTTAGAGCACCAAGGATTCTTGTTCATTCTCTCCCTCACAGCCCCCAGCTCTGTGCTAGGCACTGTGTGGCCCAGGCTCACCTCAGACTCAGCATGTAGGCAAGACTGCCCTTCAATACCTGATGCGCCCATCGTTGCCTCCCAGATGCTGGGACTGTGGCTGTGTGTCACCGTACATAGTGAAGGGTTTTGTTGCTAACAGTTCTGTTGCAGGATTCCGATGGAAAATGTCTCTCCGATGCCACCGTGGGAACTGTTGCTAGAATAGGCTTAGGCTGCCTCTGAAATGGCTGTGGAATGTGTTGTTGATTTTGAAGAGAGCAGAACCAGATGGGGCTCACAGTGTCGGCGCTGAGGTGGCGCATTGTCAGGGTTCCTCAAGTTGCTTCTGGCGCCACAGGAAGAAGTGGTTCATGGCAAAACAGCAAAAGTTCTACTCATTAAATTCATCTTAATATTCTTTCAAAATATGATTTTTCTCATTGATTTTTTTTTCCATTTAATCATTTGTTGAGGTCTAGCATGGCCAGACATAGATTTTCTTCCTTCACTTTGCTTCTGTTCCCCAAACAAAGATTCTTACCCCTTCCTGACCCATACTGTGGTCCTCTTCTTGGCTTGTAGTGCTGAGTTAATGTAGTTTATTCTGAAATCTCTTGTTATGTCAGATAAATTTACTTTGTCTGTTCAAGGCTGGCCTTGAACTCACAGAGCTCTGCCTGCTTCTGCCTCCCAAGTGGTAGAATTAAAGGGGTGCACCACCACACTTGGCTTTTTCCTTTATTTTAATATCTAAGCATACCTACAGGTTTTGGAGTAAGACTATTCTTGTCTTAAATGCTAATCAGATATGAGAGTTTAATATTTGACTTAGTCAAGGAGAGTATGTGACCTGTGTCAGAGAGTCTTGGTTTGGTTACGTGCTTATGTGAGTGTTACCTCCTCTTCTGATTGACAGGTAGTTGTAGACAGGGTTGGGAGGAGGAAGTTGTAGGGAACTGCATGAGTGTAATAATGGAAAGTTCGTGGACTTTGGCGTCAGATCTGCTGCTTAATAGGTTCCAAACACTGGGCTAATATTTGTTCTGTTTATGTGTCAGTCTGTGGCTAAGAAGCAATAAAATGGGGTTGATGTTTGCTTTAGGTTTTATTAAAATCAAATGCAGCATTCCCTACAGTACCCAACACAAAGTGCACACGTGAGATACAGTAGCTTAGAGTGTTGTAACCGTAACTAAGGAATGCTGCATGGCACAGAGCAAATCTATGCCAACTCTGACTGAAAATGCTTATTTGGTCCTCACACATGTCTCACTTCAGCTGCTTAGATTTTCTTTCAAGTACCTGTGAGTTAGTTACCAAAGGGTTATATTTGGAAAATTATTTACCCTTCTCATCTCCATCCTGAATATTTTTTTCCACTTCAG
Seq C2 exon
GCAAAAAATGGAATCCAGGAAATGGAATGTTGTTCACTAGAATCTGACTGGATCTATTTCCACCCTGATGCTTCTGGAAGAATAATACACGTTGGCCCAAATCAAGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009403:ENSRNOT00000031463:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCACCACCTCCACTCTTTGA
R:
ACTTGATTTGGGCCAACGTGT
Band lengths:
250-2023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]