GgaINT0046079 @ galGal3
Intron Retention
Gene
ENSGALG00000009558 | DCAF17
Description
NA
Coordinates
chr7:19469920-19471481:-
Coord C1 exon
chr7:19471339-19471481
Coord A exon
chr7:19470030-19471338
Coord C2 exon
chr7:19469920-19470029
Length
1309 bp
Sequences
Splice sites
5' ss Seq
TTGGTAATA
5' ss Score
4.19
3' ss Seq
GCTTTCCCTTCCTGTTTCAGGCA
3' ss Score
11.85
Exon sequences
Seq C1 exon
ATACCCCACCTTTGCTATTTGAAGCATCTTCTCTGGAGAATGCATTTCAAATTGGAGGCTTTCCTTGGCATTATATCATCACACCTAACAAGAAAAAACATAGAGGAGTCTTCTATATTTGTTCTCTGAAAGACAATGCTTTG
Seq A exon
GTAATATATTCAGATAGTAGCTTCTCTGAAATAAATGTGTATCACGTTTGTCCTCATCTCTCCTTCTGAGCATTGCTGGAGGTAACAAAGTATTCATTTTCCAGTGTGGTGCTTTCACAGGGATTGACCTACAGCATTCTATTTGCCATCCAGTGAAGTCATATTTTCTTCTGAATTACTATTGCTTCTGATATTTCCTTCATTGCACTGCCAATGCTACATAGCATTGCATTCACAACTTAATAAGTGAAGAGTCAAGCAGAATCTCATACCTAATTCCTTGTGTGGTAACATCTTAATGCACTTCCTGGTCAGCCTACCAGTTGGCATTTTAAGAATAAATTTCCTTAATATCTGTGCTTTATCCTTGATTTGTACATTTTCTCTCTCTAGAAAGATTTTATTACTCAGCTTAATCCAGCATCCCTTTTTTTTTTTTTCTTTTATGTACTATTCATCATATATTCTTTTATGCGAGATGACTGTCTCAAATTTTTTTTTTTGGATCTACATGTGACTTGAAGATATTTATATAAACAGTTTCTGGCCTCTTACTTGAGGATTCTTTACTAAAAAACTTCTCATATATGTTCTTATCTCTTTTATTAGCCTGATCAAATCAGTGATCCTCCTCCTGTCTCTTCTAGCTTCAGAACATCTTTCACAGCAATAGCTGAAGATCAATTTAGATGCAAAAGGACTTGTGCAAACCTTTCCCATCTAGTTTTTTTCTATGCGGGTTCATGCATTTTAACATTTGAATGATTAGTCAGCTAAATTTAACAACAGAAAGCATCTGCCAAAACTTCAAGATTTTGATCAGTTTGTGTCATTTGCATCTGAAATCACAAGTCACTGTAGGCTTACACACTCCACTAATATTTGTGCACAAGAAAGGCTGAGCCTGAGGCTTGAAGCACAAGTTGAAGTTTGTGCTACTATGTTACTTATGTCTTCTCAGATTACTAGAATTGTTCAAGGGTTTGCAGAATGTAGGTTAAACCTTCATTTTGTATAGTTTTAGGAGAGGCTGCACATACAGTCATGGTACAAAGTCAGTGCTTATTGCAAATTAAAAGAAAAGGTGAAACAGTTCAATGGAGTATCCTTCAGAATTAGAACTGTTGGAGTCTTTATTCATTTATTTATTTGTTACTTTGTTTCTCTGCCATCTTTTCTGGTCATGTTTATCAGAGTAATATTTATAAACCTTCAGAGGTGTGTGGAGAAGAGCTGTGTATTTCCTCTCTACTTAGATCTGGGAGGTTTTAAGTATAGTAATGTTCTAAGCTTTCCCTTCCTGTTTCAG
Seq C2 exon
GCAAAAAATGGCATACAAGATATGAAATGCTGTTCGCTGGAACCTGATTGGATATATTTCCATCCAGATATGTCGGGCAGAATAATCCACGTGGGACCAAATTTGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009558:ENSGALT00000015562:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACCTTTGCTATTTGAAGC
R:
TCAAATTTGGTCCCACGTGGA
Band lengths:
246-1555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]