BtaINT0046900 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007683 | DCAF17
Description
DDB1- and CUL4-associated factor 17 [Source:RefSeq peptide;Acc:NP_001178418]
Coordinates
chr2:25060572-25061086:-
Coord C1 exon
chr2:25060982-25061086
Coord A exon
chr2:25060678-25060981
Coord C2 exon
chr2:25060572-25060677
Length
304 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTGTTTTGTTTTGTTTTTAGTTC
3' ss Score
9.4
Exon sequences
Seq C1 exon
ATTTTTGGGAACGTCACGGATGCCACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCGGGACTGGTCAGACTTTATAGCTTCCAAGCCATCACCAAGCAG
Seq A exon
GTAGAGAAAATTCAAATTTGCCATATTCAGATTAACTTGAGATTTGGATGGAGGTATGATTTTTTTTTAATGAGATATTTTTAACATAAGGCTCTAGTATAGATTTCAGCTCTACAAAACTGTACAAATGCAGAAAGACAAAGTAACCTTTAAAAGAGGGGTGGGAAGATAAATAGAAAAGCCCTTAAATAAATAAAGACATTTTCTCTGTCATATACATGTAAATTTGATTTTTTTTTTTCTCTCTCCAGACAGCAAATAAGTAGGTGCTAAAGCCACCGTTTTTGTTTTGTTTTGTTTTTAG
Seq C2 exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGATGGGGTGGGACTACTGGAACTGTAGGAGAGGCTCCCTTTGGCATTCCTTGTAATATTAAAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007683:ENSBTAT00000010105:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTGGGAACGTCACGGATG
R:
ATTACAAGGAATGCCAAAGGGAGC
Band lengths:
198-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]