HsaINT0045227 @ hg19
Intron Retention
Gene
ENSG00000115827 | DCAF17
Description
DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:25784]
Coordinates
chr2:172314481-172314987:+
Coord C1 exon
chr2:172314481-172314585
Coord A exon
chr2:172314586-172314881
Coord C2 exon
chr2:172314882-172314987
Length
296 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TTGTTTTGTTTTGTTTTTAGTTC
3' ss Score
9.4
Exon sequences
Seq C1 exon
ATTTTTGGGAACGTTACAGATGCTACCTTGTCTCATGGAATACTGATTGTGATGTACAGCTCAGGACTGGTCAGACTCTATAGCTTCCAAACCATCGCTGAACAG
Seq A exon
GTAGAGAAAACTGAAATTTGTCATGTTACTATTAGCATGAGTTTTCGACTAAAGTATGATTTTTTTTTTTAGTGAGATGCTTTTAGAGTAAGGCACTTCTGTAGATTTTGGCTCTAAAAAACTGTAGAAATGTAGAAGACAAGTAACCTTTAAAGCAGGGGTGGGGAAGATAAACAGAAAGGCCATTGGAAAAAGACATTTTCTTTGTCATATACATGTGAATTTTATTTTTGTTCTCTCCAGATATCAAATAAATAGGTGCTAAAGCCACCATTTTTGTTTTGTTTTGTTTTTAG
Seq C2 exon
TTCATGCAACAGAAACTTGACTTAGGGTGTGCATGCAGATGGGGTGGGACTACTGGAACTGTAGGAGAGGCTCCTTTTGGCATTCCTTGTAATATTAAAATCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115827-DCAF17:NM_025000:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTGGGAACGTTACAGATGCT
R:
TACAAGGAATGCCAAAAGGAGCC
Band lengths:
196-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)