DreINT0055027 @ danRer10
Intron Retention
Gene
ENSDARG00000074909 | dcaf17
Description
ddb1 and cul4 associated factor 17 [Source:ZFIN;Acc:ZDB-GENE-071008-1]
Coordinates
chr9:3537519-3538000:-
Coord C1 exon
chr9:3537893-3538000
Coord A exon
chr9:3537625-3537892
Coord C2 exon
chr9:3537519-3537624
Length
268 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TAATCATGATTCCACTTCAGTTT
3' ss Score
3.7
Exon sequences
Seq C1 exon
GTGTTTGGTAAGACTGCAGTGGATGTGCTGCTGTCACAGGGAGTGTTAGCTGTATCACACAGCTCAAAACTCGTCCGACTTTACAGTTTTGAGTACATTGTTAACAAG
Seq A exon
GTAATGGCATATTATATATTATATTCCTGCTGAAAAATCAAGCTTAAACCAGCCTAGGTTATCTGTACTTATAAAGTTTATATTCTGCATGATCCTATTCAAGATGCTTCAAACTAAGTTCTTTCTAGTTCTTCGTTTGAGATCAAAATGATGTCCGAAAAGTGGCTTGTTAATAGTCTGAATTGTGTTTTAAAAAGAAAGTGTGACTGAATATTTGCTGGACCGAATGTTTGTTGAAAATGTCGGTTTAATCATGATTCCACTTCAG
Seq C2 exon
TTTAGAACTGAGGAGCTGATTCTGGGACAGCAGTGTGAGCTGAATAATGCAAGGGGAATCGTGGGAGATGCTCCATATGGTGTTCCGGTCAACATTTGCATTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074909:ENSDART00000145043:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTTGGTAAGACTGCAGTGGA
R:
TGAATGCAAATGTTGACCGGA
Band lengths:
212-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]